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cdx1 caudal type homeobox 1 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 395055, updated on 19-Jul-2022

Summary

Official Symbol
cdx1provided by Xenbase
Official Full Name
caudal type homeobox 1provided by Xenbase
Primary source
Xenbase:XB-GENE-485396
See related
Ensembl:ENSXETG00000010282
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
cdx-1; xcad2; xtcad2
Orthologs
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Genomic context

See cdx1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
3
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 3 NC_030679.2 (21131624..21149943, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 3 NC_030679.1 (7356348..7374654)

Chromosome 3 - NC_030679.2Genomic Context describing neighboring genes Neighboring gene calcium/calmodulin dependent protein kinase (CaM kinase) II alpha Neighboring gene solute carrier family 6 member 7 Neighboring gene platelet-derived growth factor receptor, beta polypeptide Neighboring gene colony stimulating factor 1 receptor

Genomic regions, transcripts, and products

Bibliography

General protein information

Preferred Names
homeobox protein CDX-1
Names
cad2
caudal type homeo box transcription factor 1
caudal type homeobox transcription factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_204085.1NP_989416.1  homeobox protein CDX-1

    See identical proteins and their annotated locations for NP_989416.1

    Status: PROVISIONAL

    Source sequence(s)
    AF417198
    UniProtKB/Swiss-Prot
    Q90X89
    Related
    ENSXETP00000022650.4, ENSXETT00000022650.5
    Conserved Domains (2) summary
    pfam00046
    Location:153205
    Homeobox; Homeobox domain
    pfam04731
    Location:13133
    Caudal_act; Caudal like protein activation region

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030679.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    21131624..21149943 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)