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Sf3a2 Splicing factor 3a subunit 2 [ Drosophila melanogaster (fruit fly) ]

Gene ID: 39456, updated on 6-Jul-2021

Summary

Official Symbol
Sf3a2provided by FlyBase
Official Full Name
Splicing factor 3a subunit 2provided by FlyBase
Primary source
FLYBASE:FBgn0036314
Locus tag
Dmel_CG10754
Gene type
protein coding
RNA name
splicing factor 3a subunit 2
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
CG10754; CG2807; Dmel\CG10754; SF3A2
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Genomic context

See Sf3a2 in Genome Data Viewer
Location:
69E4-69E4; 3-39 cM
Exon count:
1
Annotation release Status Assembly Chr Location
Release 6.32 current Release 6 plus ISO1 MT (GCF_000001215.4) 3L NT_037436.4 (12813028..12814019, complement)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3L NT_037436.3 (12806128..12807119, complement)

Chromosome 3L - NT_037436.4Genomic Context describing neighboring genes Neighboring gene antisense RNA:CR46251 Neighboring gene Sin3A-associated protein 130 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables RNA binding ISS
Inferred from Sequence or Structural Similarity
more info
 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IC
Inferred by Curator
more info
PubMed 
involved_in positive regulation of gene expression IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in spliceosomal complex assembly IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
part_of U2 snRNP IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
part_of U2 snRNP ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
part_of U2-type prespliceosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
part_of catalytic step 2 spliceosome HDA PubMed 
part_of catalytic step 2 spliceosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
part_of precatalytic spliceosome HDA PubMed 

General protein information

Preferred Names
splicing factor 3a subunit 2
Names
CG10754-PA
Sf3a2-PA

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_037436.4 Reference assembly

    Range
    12813028..12814019 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_140346.2NP_648603.1  splicing factor 3a subunit 2 [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_648603.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9VU15
    Related
    FBpp0075676, FBtr0075944
    Conserved Domains (3) summary
    smart00451
    Location:5285
    ZnF_U1; U1-like zinc finger
    COG5246
    Location:1214
    PRP11; Splicing factor 3a, subunit 2 [RNA processing and modification]
    pfam16835
    Location:129207
    SF3A2; Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11)
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