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myf5 myogenic factor 5 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 394529, updated on 17-Aug-2024

Summary

Official Symbol
myf5provided by Xenbase
Official Full Name
myogenic factor 5provided by Xenbase
Primary source
Xenbase:XB-GENE-493550
See related
Ensembl:ENSXETG00000014520
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
Xmyf5; myf-5; Xmyf-5
Orthologs
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Genomic context

See myf5 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
3
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 3 NC_030679.2 (52543905..52547076)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 3 NC_030679.1 (43006190..43009332)

Chromosome 3 - NC_030679.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116409732 Neighboring gene myogenic factor 6 Neighboring gene lin-7 homolog A Neighboring gene acyl-CoA synthetase short chain family member 3 Neighboring gene protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2

Genomic regions, transcripts, and products

General gene information

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within cell differentiation IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within muscle organ development IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_203601.1NP_988932.1  myogenic factor 5

    See identical proteins and their annotated locations for NP_988932.1

    Status: PROVISIONAL

    Source sequence(s)
    BC061421
    UniProtKB/TrEMBL
    F6SBB9, F7BCT0, Q7T108, Q8QG50
    Related
    ENSXETP00000031778.3, ENSXETT00000031778.5
    Conserved Domains (3) summary
    smart00520
    Location:188
    BASIC; Basic domain in HLH proteins of MYOD family
    pfam12232
    Location:143214
    Myf5; Myogenic determination factor 5
    cd18937
    Location:83146
    bHLH_TS_Myf5; basic helix-loop-helix (bHLH) domain found in myogenic factor 5 (Myf-5) and similar proteins

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030679.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    52543905..52547076
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)