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per2.L period circadian regulator 2 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 394381, updated on 16-Oct-2017

Summary

Official Symbol
per2.L
Official Full Name
period circadian regulator 2 L homeolog
Primary source
Xenbase:XB-GENE-865597
Locus tag
XELAEV_18027890mg
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
per2; xPer2; per2-A; period2
Annotation information
Annotation category: partial on reference assembly

Genomic context

See per2.L in Genome Data Viewer
Location:
chromosome: 5L
Exon count:
23
Annotation release Status Assembly Chr Location
100 current Xenopus_laevis_v2 (GCF_001663975.1) 5L NC_030732.1 (126622972..126657332, complement)

Chromosome 5L - NC_030732.1Genomic Context describing neighboring genes Neighboring gene hairy and enhancer of split 6, gene 1 L homeolog Neighboring gene hes family bHLH transcription factor 6 L homeolog Neighboring gene phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta L homeolog Neighboring gene forkhead box L2 L homeolog

Genomic regions, transcripts, and products

Genomic Sequence:
NC_030732.1 Chromosome 5L Reference Xenopus_laevis_v2 Primary Assembly

Pathways from BioSystems

  • Herpes simplex infection, organism-specific biosystem (from KEGG)
    Herpes simplex infection, organism-specific biosystemHerpes simplex virus (HSV) infections are very common worldwide, with the prevalence of HSV-1 reaching up to 80%-90%. Primary infection with HSV takes place in the mucosa, followed by the establishme...
  • Herpes simplex infection, conserved biosystem (from KEGG)
    Herpes simplex infection, conserved biosystemHerpes simplex virus (HSV) infections are very common worldwide, with the prevalence of HSV-1 reaching up to 80%-90%. Primary infection with HSV takes place in the mucosa, followed by the establishme...

General protein information

Preferred Names
period circadian regulator 2 L homeolog
Names
period 2
period circadian clock 2 L homeolog
period homolog 2

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001087629.1NP_001081098.1  period circadian regulator 2 L homeolog

    See identical proteins and their annotated locations for NP_001081098.1

    Status: PROVISIONAL

    Source sequence(s)
    AF199499
    UniProtKB/TrEMBL
    Q9DG29
    Conserved Domains (5) summary
    cd00130
    Location:446537
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam08226
    Location:10361106
    DUF1720; Domain of unknown function (DUF1720)
    pfam08447
    Location:449533
    PAS_3; PAS fold
    pfam12114
    Location:12361409
    Period_C; Period protein 2/3C-terminal region
    cl23807
    Location:10561112
    WWbp; WW-domain ligand protein

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v2 Primary Assembly

Genomic

  1. NC_030732.1 Reference Xenopus_laevis_v2 Primary Assembly

    Range
    126622972..126657332 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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