Format

Send to:

Choose Destination

btrc.S beta-transducin repeat containing E3 ubiquitin protein ligase S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 394362, updated on 5-Aug-2018

Summary

Official Symbol
btrc.S
Official Full Name
beta-transducin repeat containing E3 ubiquitin protein ligase S homeolog
Primary source
Xenbase:XB-GENE-865578
Locus tag
XELAEV_18036950mg
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
btrc; fwd1; btrcp; fbw1a; fbxw1; btrc-a; btrcp1; fbxw1a; betaTrCP; beta-TrCP
Annotation information
Annotation category: partial on reference assembly

Genomic context

See btrc.S in Genome Data Viewer
Location:
chromosome: 7S
Exon count:
13
Annotation release Status Assembly Chr Location
100 current Xenopus_laevis_v2 (GCF_001663975.1) 7S NC_030737.1 (19978003..20093582)

Chromosome 7S - NC_030737.1Genomic Context describing neighboring genes Neighboring gene T-cell leukemia homeobox protein 1-like Neighboring gene ladybird homeobox 1 S homeolog Neighboring gene solute carrier family 2 (facilitated glucose transporter), member 9 S homeolog Neighboring gene uncharacterized LOC108697429

Genomic regions, transcripts, and products

Genomic Sequence:
NC_030737.1 Chromosome 7S Reference Xenopus_laevis_v2 Primary Assembly

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Pathways from BioSystems

  • Hedgehog signaling pathway, organism-specific biosystem (from KEGG)
    Hedgehog signaling pathway, organism-specific biosystemThe Hedgehog (Hh) signaling pathway has numerous roles in the control of cell proliferation, tissue patterning, stem cell maintenance and development. The primary cilium is an important center for tr...
  • Hedgehog signaling pathway, conserved biosystem (from KEGG)
    Hedgehog signaling pathway, conserved biosystemThe Hedgehog (Hh) signaling pathway has numerous roles in the control of cell proliferation, tissue patterning, stem cell maintenance and development. The primary cilium is an important center for tr...
  • Oocyte meiosis, organism-specific biosystem (from KEGG)
    Oocyte meiosis, organism-specific biosystemDuring meiosis, a single round of DNA replication is followed by two rounds of chromosome segregation, called meiosis I and meiosis II. At meiosis I, homologous chromosomes recombine and then segrega...
  • Oocyte meiosis, conserved biosystem (from KEGG)
    Oocyte meiosis, conserved biosystemDuring meiosis, a single round of DNA replication is followed by two rounds of chromosome segregation, called meiosis I and meiosis II. At meiosis I, homologous chromosomes recombine and then segrega...
  • SCF-BTRC complex, organism-specific biosystem (from KEGG)
    SCF-BTRC complex, organism-specific biosystemStructural complex; Genetic information processing; Ubiquitin system
  • SCF-BTRC complex, conserved biosystem (from KEGG)
    SCF-BTRC complex, conserved biosystemStructural complex; Genetic information processing; Ubiquitin system
  • Ubiquitin mediated proteolysis, organism-specific biosystem (from KEGG)
    Ubiquitin mediated proteolysis, organism-specific biosystemProtein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to protein...
  • Ubiquitin mediated proteolysis, conserved biosystem (from KEGG)
    Ubiquitin mediated proteolysis, conserved biosystemProtein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to protein...
  • Wnt signaling pathway, organism-specific biosystem (from KEGG)
    Wnt signaling pathway, organism-specific biosystemWnt proteins are secreted morphogens that are required for basic developmental processes, such as cell-fate specification, progenitor-cell proliferation and the control of asymmetric cell division, i...
  • Wnt signaling pathway, conserved biosystem (from KEGG)
    Wnt signaling pathway, conserved biosystemWnt proteins are secreted morphogens that are required for basic developmental processes, such as cell-fate specification, progenitor-cell proliferation and the control of asymmetric cell division, i...

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General protein information

Preferred Names
beta-TrCP
Names
beta-transducin repeat-containing protein

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001087595.1NP_001081064.1  beta-TrCP

    See identical proteins and their annotated locations for NP_001081064.1

    Status: PROVISIONAL

    Source sequence(s)
    BC079732
    UniProtKB/Swiss-Prot
    Q91854
    Conserved Domains (5) summary
    COG2319
    Location:219515
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:232510
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam12125
    Location:68106
    Beta-TrCP_D; D domain of beta-TrCP
    pfam12937
    Location:110157
    F-box-like; F-box-like
    sd00039
    Location:235270
    7WD40; WD40 repeat [structural motif]

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v2 Primary Assembly

Genomic

  1. NC_030737.1 Reference Xenopus_laevis_v2 Primary Assembly

    Range
    19978003..20093582
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Support Center