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vti1b vesicle transport through interaction with t-SNAREs 1B [ Danio rerio (zebrafish) ]

Gene ID: 394011, updated on 2-Nov-2024

Summary

Official Symbol
vti1bprovided by ZNC
Official Full Name
vesicle transport through interaction with t-SNAREs 1Bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-1148
See related
Ensembl:ENSDARG00000039270 AllianceGenome:ZFIN:ZDB-GENE-040426-1148
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:63525
Summary
Predicted to enable SNAP receptor activity and SNARE binding activity. Predicted to be involved in several processes, including Golgi vesicle transport; regulation of protein localization to plasma membrane; and retrograde transport, endosome to Golgi. Predicted to act upstream of or within intracellular protein transport and vesicle-mediated transport. Predicted to be located in membrane. Predicted to be part of SNARE complex. Predicted to be active in Golgi apparatus; cytoplasmic vesicle membrane; and endoplasmic reticulum membrane. Orthologous to human VTI1B (vesicle transport through interaction with t-SNAREs 1B). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
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Genomic context

See vti1b in Genome Data Viewer
Location:
chromosome: 13
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 13 NC_007124.7 (33040435..33054817, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 13 NC_007124.6 (32909985..32924367, complement)

Chromosome 13 - NC_007124.7Genomic Context describing neighboring genes Neighboring gene RNA binding motif protein 25a Neighboring gene arginase 2 Neighboring gene retinol dehydrogenase 12 Neighboring gene zinc finger, FYVE domain containing 26

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Clone Names

  • MGC63525

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables SNAP receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables SNARE binding IBA
Inferred from Biological aspect of Ancestor
more info
 
Process Evidence Code Pubs
involved_in Golgi to vacuole transport IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in intra-Golgi vesicle-mediated transport IBA
Inferred from Biological aspect of Ancestor
more info
 
acts_upstream_of_or_within intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 
involved_in macroautophagy IBA
Inferred from Biological aspect of Ancestor
more info
 
acts_upstream_of_or_within protein transport IEA
Inferred from Electronic Annotation
more info
 
involved_in regulation of protein localization to plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in retrograde transport, endosome to Golgi IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in vesicle fusion with Golgi apparatus IBA
Inferred from Biological aspect of Ancestor
more info
 
acts_upstream_of_or_within vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in ER to Golgi transport vesicle membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
is_active_in Golgi apparatus IBA
Inferred from Biological aspect of Ancestor
more info
 
part_of SNARE complex IBA
Inferred from Biological aspect of Ancestor
more info
 
is_active_in endoplasmic reticulum membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
is_active_in late endosome membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
vesicle transport through interaction with t-SNAREs homolog 1B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_201036.1NP_957330.1  vesicle transport through interaction with t-SNAREs homolog 1B

    See identical proteins and their annotated locations for NP_957330.1

    Status: PROVISIONAL

    Source sequence(s)
    BC055131
    UniProtKB/TrEMBL
    A0A8M1PC48, Q7SY45
    Related
    ENSDARP00000057378.4, ENSDART00000057379.6
    Conserved Domains (2) summary
    cd15890
    Location:130191
    SNARE_Vti1b; SNARE motif of Vti1b-like
    pfam05008
    Location:1390
    V-SNARE; Vesicle transport v-SNARE protein N-terminus

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007124.7 Reference GRCz11 Primary Assembly

    Range
    33040435..33054817 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)