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Rh7 Rhodopsin 7 [ Drosophila melanogaster (fruit fly) ]

Gene ID: 39389, updated on 9-May-2019

Summary

Official Symbol
Rh7provided by FlyBase
Official Full Name
Rhodopsin 7provided by FlyBase
Primary source
FLYBASE:FBgn0036260
Locus tag
Dmel_CG5638
Gene type
protein coding
RNA name
rhodopsin 7
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
anon-WO0170980.34; anon-WO0170980.35; CG5638; DMELRH7; Dmel\CG5638; Rh; rh7

Genomic context

See Rh7 in Genome Data Viewer
Location:
68F8-69A1; 3-38 cM
Exon count:
4
Annotation release Status Assembly Chr Location
Release 6.26 current Release 6 plus ISO1 MT (GCF_000001215.4) 3L NT_037436.4 (12164205..12175482, complement)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3L NT_037436.3 (12157305..12168582, complement)

Chromosome 3L - NT_037436.4Genomic Context describing neighboring genes Neighboring gene Neurexin IV Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene Carbonic anhydrase 2 Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

Bibliography

Pathways from BioSystems

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
G protein-coupled photoreceptor activity ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
G protein-coupled receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
peptide binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
G protein-coupled receptor signaling pathway ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
cellular response to light stimulus IMP
Inferred from Mutant Phenotype
more info
PubMed 
circadian behavior IMP
Inferred from Mutant Phenotype
more info
PubMed 
entrainment of circadian clock by photoperiod IGI
Inferred from Genetic Interaction
more info
PubMed 
entrainment of circadian clock by photoperiod IMP
Inferred from Mutant Phenotype
more info
PubMed 
response to photoperiod, blue light IMP
Inferred from Mutant Phenotype
more info
PubMed 
rhodopsin mediated signaling pathway IMP
Inferred from Mutant Phenotype
more info
PubMed 
visual perception IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
integral component of membrane ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
integral component of plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
rhodopsin 7
Names
CG5638-PA
Rh7-PA
rhodopsin

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_037436.4 Reference assembly

    Range
    12164205..12175482 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_079311.3NP_524035.2  rhodopsin 7 [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_524035.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9VTU7
    Related
    FBpp0075752, FBtr0076020
    Conserved Domains (2) summary
    pfam00001
    Location:133384
    7tm_1; 7 transmembrane receptor (rhodopsin family)
    cl21561
    Location:125247
    7tm_4; Olfactory receptor
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