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sdha succinate dehydrogenase complex, subunit A, flavoprotein (Fp) [ Danio rerio (zebrafish) ]

Gene ID: 393884, updated on 14-Oct-2021

Summary

Official Symbol
sdhaprovided by ZNC
Official Full Name
succinate dehydrogenase complex, subunit A, flavoprotein (Fp)provided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-874
See related
Ensembl:ENSDARG00000016721
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:56051; im:7141001
Orthologs
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Genomic context

See sdha in Genome Data Viewer
Location:
chromosome: 19
Exon count:
15
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (7276064..7291733, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (7357139..7372808, complement)
103 previous assembly Zv9 (GCF_000002035.4) 19 NC_007130.5 (7898600..7914269, complement)

Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene collagen, type XI, alpha 2 Neighboring gene retinoid x receptor, beta a Neighboring gene uncharacterized LOC108180139 Neighboring gene coiled-coil domain containing 127b

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Pathways from PubChem

General gene information

Homology

Clone Names

  • MGC56051

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables electron transfer activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables flavin adenine dinucleotide binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables flavin adenine dinucleotide binding IEA
Inferred from Electronic Annotation
more info
 
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 
enables oxidoreductase activity, acting on the CH-CH group of donors IEA
Inferred from Electronic Annotation
more info
 
enables succinate dehydrogenase (ubiquinone) activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables succinate dehydrogenase (ubiquinone) activity IEA
Inferred from Electronic Annotation
more info
 
enables succinate dehydrogenase (ubiquinone) activity ISS
Inferred from Sequence or Structural Similarity
more info
 
enables succinate dehydrogenase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within electron transport chain IEA
Inferred from Electronic Annotation
more info
 
involved_in mitochondrial electron transport, succinate to ubiquinone IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
acts_upstream_of_or_within tricarboxylic acid cycle IEA
Inferred from Electronic Annotation
more info
 
involved_in tricarboxylic acid cycle IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
located_in mitochondrial inner membrane IEA
Inferred from Electronic Annotation
more info
 
part_of mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone) IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
part_of mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone) ISS
Inferred from Sequence or Structural Similarity
more info
 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial
Names
flavoprotein subunit of complex II
fp
NP_957204.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_200910.1NP_957204.1  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial precursor

    See identical proteins and their annotated locations for NP_957204.1

    Status: PROVISIONAL

    Source sequence(s)
    BC045885
    UniProtKB/Swiss-Prot
    Q7ZVF3
    UniProtKB/TrEMBL
    B2GQ13
    Related
    ENSDARP00000018027.9, ENSDART00000015559.11
    Conserved Domains (3) summary
    PTZ00139
    Location:45661
    PTZ00139; Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
    pfam02910
    Location:510661
    Succ_DH_flav_C; Fumarate reductase flavoprotein C-term
    cl21454
    Location:82468
    NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007130.7 Reference GRCz11 Primary Assembly

    Range
    7276064..7291733 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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