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prdx6 peroxiredoxin 6 [ Danio rerio (zebrafish) ]

Gene ID: 393778, updated on 12-Aug-2018

Summary

Official Symbol
prdx6provided by ZNC
Official Full Name
peroxiredoxin 6provided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-1778
See related
Ensembl:ENSDARG00000043511 Vega:OTTDARG00000009051
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Also known as
zgc:73360
Orthologs

Genomic context

See prdx6 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
5
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 20 NC_007131.7 (15164484..15184752)
105 previous assembly GRCz10 (GCF_000002035.5) 20 NC_007131.6 (15264981..15285249)

Chromosome 20 - NC_007131.7Genomic Context describing neighboring genes Neighboring gene si:dkey-239i20.4 Neighboring gene phospholipid phosphatase 6 Neighboring gene uncharacterized LOC103909304 Neighboring gene Jun proto-oncogene, AP-1 transcription factor subunit

Genomic regions, transcripts, and products

Pathways from BioSystems

General gene information

Markers

Homology

Clone Names

  • MGC73360

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
antioxidant activity IEA
Inferred from Electronic Annotation
more info
 
oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 
peroxidase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
peroxiredoxin activity IEA
Inferred from Electronic Annotation
more info
 
protein binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
cell redox homeostasis IEA
Inferred from Electronic Annotation
more info
 
cellular response to oxidative stress IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
hydrogen peroxide catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
oxidation-reduction process IEA
Inferred from Electronic Annotation
more info
 
response to oxidative stress IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
cytosol IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_200805.1NP_957099.1  peroxiredoxin-6

    See identical proteins and their annotated locations for NP_957099.1

    Status: PROVISIONAL

    Source sequence(s)
    BC059671
    UniProtKB/TrEMBL
    Q6PBK9
    Related
    ENSDARP00000063876.4, OTTDARP00000008949, ENSDART00000063877.4, OTTDART00000010391
    Conserved Domains (2) summary
    COG0450
    Location:5199
    AhpC; Alkyl hydroperoxide reductase subunit AhpC (peroxiredoxin) [Defense mechanisms]
    cd03016
    Location:6221
    PRX_1cys; Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by ...

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007131.7 Reference GRCz11 Primary Assembly

    Range
    15164484..15184752
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018395065.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    119877..139260
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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