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ptpn12 protein tyrosine phosphatase non-receptor type 12 [ Danio rerio (zebrafish) ]

Gene ID: 393642, updated on 13-Jun-2020

Summary

Official Symbol
ptpn12provided by ZNC
Official Full Name
protein tyrosine phosphatase non-receptor type 12provided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-1441
See related
Ensembl:ENSDARG00000102141
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:65856; zgc:77437
Annotation information
Annotation category: partial on reference assembly
Orthologs

Genomic context

See ptpn12 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
5
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 4 NC_007115.7 (17307..20765, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 4 NC_007115.6 (248648..252106)
103 previous assembly Zv9 (GCF_000002035.4) 19 NC_007130.5 (47058491..47058880)

Chromosome 4 - NC_007115.7Genomic Context describing neighboring genes Neighboring gene glutamate receptor ionotropic, kainate 2-like Neighboring gene putative homeodomain transcription factor 2 Neighboring gene proline rich 5b (renal)

Genomic regions, transcripts, and products

Pathways from PubChem

General gene information

Markers

Homology

Clone Names

  • MGC65856

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
hydrolase activity IEA
Inferred from Electronic Annotation
more info
 
phosphatase activity IEA
Inferred from Electronic Annotation
more info
 
phosphoprotein phosphatase activity IEA
Inferred from Electronic Annotation
more info
 
protein tyrosine phosphatase activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
dephosphorylation IEA
Inferred from Electronic Annotation
more info
 
protein dephosphorylation IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cytoplasm IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
tyrosine-protein phosphatase non-receptor type 12
NP_956963.1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_200669.1NP_956963.1  tyrosine-protein phosphatase non-receptor type 12

    See identical proteins and their annotated locations for NP_956963.1

    Status: PROVISIONAL

    Source sequence(s)
    BC058051
    UniProtKB/TrEMBL
    Q6PEI4
    Related
    ENSDARP00000130978.1, ENSDART00000171737.2
    Conserved Domains (2) summary
    cd00047
    Location:57289
    PTPc; Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr ...
    pfam00102
    Location:55289
    Y_phosphatase; Protein-tyrosine phosphatase

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007115.7 Reference GRCz11 Primary Assembly

    Range
    17307..20765 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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