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selenbp1 selenium binding protein 1 [ Danio rerio (zebrafish) ]

Gene ID: 393542, updated on 9-Sep-2025
Official Symbol
selenbp1provided by ZNC
Official Full Name
selenium binding protein 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-1436
See related
Ensembl:ENSDARG00000024717 AllianceGenome:ZFIN:ZDB-GENE-040426-1436
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
MTO; zgc:65844
Summary
Predicted to enable methanethiol oxidase activity and selenium binding activity. Predicted to be involved in protein transport. Predicted to be located in cytosol; membrane; and nucleus. Is expressed in several structures, including brain; cardiovascular system; digestive system; endoderm; and pleuroperitoneal region. Orthologous to human SELENBP1 (selenium binding protein 1). [provided by Alliance of Genome Resources, Jul 2025]
Orthologs
human all
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See selenbp1 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2025_04 current GRCz12tu (GCF_049306965.1) 16 NC_133191.1 (42543448..42562491)
RS_2024_08 previous assembly GRCz11 (GCF_000002035.6) 16 NC_007127.7 (38138256..38157299)

Chromosome 16 - NC_133191.1Genomic Context describing neighboring genes Neighboring gene cone RDH-like Neighboring gene pogo transposable element derived with ZNF domain b Neighboring gene phosphatidylinositol 4-kinase, catalytic, beta Neighboring gene myosin IEb

Go to nucleotide: Graphics FASTA GenBank

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Related articles in PubMed

  1. MRAP2a Binds and Modulates Activity and Localisation of Prokineticin Receptor 1 in Zebrafish. Fullone MR, et al. Int J Mol Sci, 2024 Jul 17. PMID 39063058, Free PMC Article
  2. Protective Effects of Sal B on Oxidative Stress-Induced Aging by Regulating the Keap1/Nrf2 Signaling Pathway in Zebrafish. Li E, et al. Molecules, 2021 Aug 29. PMID 34500674, Free PMC Article
  3. Variation of DNA Methylome of Zebrafish Cells under Cold Pressure. Han B, et al. PLoS One, 2016. PMID 27494266, Free PMC Article
  4. Sex-specific transcriptional responses of the zebrafish (Danio rerio) brain selenoproteome to acute sodium selenite supplementation. Benner MJ, et al. Physiol Genomics, 2013 Aug 1. PMID 23737534, Free PMC Article
  5. Identification and expression of carbonic anhydrase 2, myosin regulatory light chain 2 and selenium-binding protein 1 in zebrafish Danio rerio: Implication for age-related biomarkers. Feng S, et al. Gene Expr Patterns, 2018 Sep. PMID 29738878

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

Homology

Clone Names

  • MGC65844

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables methanethiol oxidase activity IEA
Inferred from Electronic Annotation
more info
  
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
  
enables selenium binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within protein transport IEA
Inferred from Electronic Annotation
more info
  
involved_in protein transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in cytosol IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  
Preferred Names
methanethiol oxidase
XP_005158264.1

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_200570.2 → NP_956864.2  methanethiol oxidase

    Status: VALIDATED

    Source sequence(s)
    JBMGRA010000016

RefSeqs of Annotated Genomes: GCF_049306965.1-RS_2025_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz12tu Primary Assembly

Genomic

  1. NC_133191.1 Reference GRCz12tu Primary Assembly

    Range
    42543448..42562491
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005158207.3 → XP_005158264.1  methanethiol oxidase isoform X1

    UniProtKB/TrEMBL
    A0A385NIE1, E9QB46
    Related
    ENSDARP00000116604.1, ENSDART00000131694.2
    Conserved Domains (1) summary
    pfam05694
    Location:8 → 473
    SBP56; 56kDa selenium binding protein (SBP56)

RNA

  1. XR_012391374.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6PHD9.1 GenPept UniProtKB/Swiss-Prot:Q6PHD9

Gene LinkOut

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