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selenbp1 selenium binding protein 1 [ Danio rerio (zebrafish) ]

Gene ID: 393542, updated on 27-Mar-2024

Summary

Official Symbol
selenbp1provided by ZNC
Official Full Name
selenium binding protein 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-1436
See related
Ensembl:ENSDARG00000024717 AllianceGenome:ZFIN:ZDB-GENE-040426-1436
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
MTO; zgc:65844
Summary
Predicted to enable methanethiol oxidase activity and selenium binding activity. Predicted to act upstream of or within protein transport. Predicted to be located in cytosol; membrane; and nucleus. Is expressed in several structures, including brain; cardiovascular system; digestive system; endoderm; and pleuroperitoneal region. Orthologous to human SELENBP1 (selenium binding protein 1). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
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Genomic context

See selenbp1 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
12
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 16 NC_007127.7 (38138208..38157299)
105 previous assembly GRCz10 (GCF_000002035.5) 16 NC_007127.6 (38188176..38207267)

Chromosome 16 - NC_007127.7Genomic Context describing neighboring genes Neighboring gene si:dkey-23o4.6 Neighboring gene pogo transposable element derived with ZNF domain b Neighboring gene phosphatidylinositol 4-kinase, catalytic, beta Neighboring gene myosin IEb

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Pathways from PubChem

General gene information

Clone Names

  • MGC65844

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables methanethiol oxidase activity IEA
Inferred from Electronic Annotation
more info
 
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 
enables selenium binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within protein transport IEA
Inferred from Electronic Annotation
more info
 
involved_in protein transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
methanethiol oxidase; selenium-binding protein 1
NP_956864.1
XP_005158264.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_200570.1NP_956864.1  methanethiol oxidase

    See identical proteins and their annotated locations for NP_956864.1

    Status: PROVISIONAL

    Source sequence(s)
    BC056590
    UniProtKB/Swiss-Prot
    Q6PHD9
    Conserved Domains (1) summary
    pfam05694
    Location:8457
    SBP56; 56kDa selenium binding protein (SBP56)

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007127.7 Reference GRCz11 Primary Assembly

    Range
    38138208..38157299
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005158207.2XP_005158264.1  selenium-binding protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A385NIE1, E9QB46
    Related
    ENSDARP00000116604.1, ENSDART00000131694.2
    Conserved Domains (1) summary
    pfam05694
    Location:8473
    SBP56; 56kDa selenium binding protein (SBP56)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394969.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    112115..135091
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)