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dnajc5gb DnaJ (Hsp40) homolog, subfamily C, member 5 gamma b [ Danio rerio (zebrafish) ]

Gene ID: 393371, updated on 27-Mar-2024

Summary

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Official Symbol
dnajc5gbprovided by ZNC
Official Full Name
DnaJ (Hsp40) homolog, subfamily C, member 5 gamma bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-1238
See related
Ensembl:ENSDARG00000017687 AllianceGenome:ZFIN:ZDB-GENE-040426-1238
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:63689; wu:fa01g12
Summary
Orthologous to human DNAJC5G (DnaJ heat shock protein family (Hsp40) member C5 gamma). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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Location:
chromosome: 17
Exon count:
8
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 17 NC_007128.7 (6490089..6508513, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 17 NC_007128.6 (6334370..6351326, complement)

Chromosome 17 - NC_007128.7Genomic Context describing neighboring genes Neighboring gene TatD DNase domain containing 3-like Neighboring gene coenzyme Q8A, genome duplicate b Neighboring gene uncharacterized LOC110438034 Neighboring gene tumor protein p53 inducible protein 3 Neighboring gene uncharacterized LOC101886756

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Tpo knockout in zebrafish partially recapitulates clinical manifestations of congenital hypothyroidism and reveals the involvement of TH in proper development of glucose homeostasis. Fang Y, et al. Gen Comp Endocrinol, 2022 Jul 1. PMID 35367205
  2. Evolution of gene function and regulatory control after whole-genome duplication: comparative analyses in vertebrates. Kassahn KS, et al. Genome Res, 2009 Aug. PMID 19439512, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC63689

Gene Ontology Provided by ZFIN

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
DnaJ (Hsp40) homolog, subfamily C, member 5 gamma b; dnaJ (Hsp40) homolog, subfamily C, member 5 gamma b

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_200400.1 → NP_956694.1  DnaJ (Hsp40) homolog, subfamily C, member 5 gamma b

    See identical proteins and their annotated locations for NP_956694.1

    Status: PROVISIONAL

    Source sequence(s)
    BC054133
    UniProtKB/TrEMBL
    Q7SZ54
    Related
    ENSDARP00000016772.8, ENSDART00000002778.10
    Conserved Domains (2) summary
    COG0484
    Location:14 → 86
    DnaJ; DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
    pfam00226
    Location:17 → 79
    DnaJ; DnaJ domain

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007128.7 Reference GRCz11 Primary Assembly

    Range
    6490089..6508513 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005158564.4 → XP_005158621.1  dnaJ (Hsp40) homolog, subfamily C, member 5 gamma b isoform X1

    See identical proteins and their annotated locations for XP_005158621.1

    UniProtKB/TrEMBL
    A0A8M2B4Z2
    Conserved Domains (2) summary
    COG0484
    Location:14 → 86
    DnaJ; DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
    pfam00226
    Location:17 → 79
    DnaJ; DnaJ domain

  2. XM_005158565.4 → XP_005158622.1  dnaJ (Hsp40) homolog, subfamily C, member 5 gamma b isoform X1

    See identical proteins and their annotated locations for XP_005158622.1

    UniProtKB/TrEMBL
    A0A8M2B4Z2
    Conserved Domains (2) summary
    COG0484
    Location:14 → 86
    DnaJ; DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
    pfam00226
    Location:17 → 79
    DnaJ; DnaJ domain

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394974.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    114552..131286 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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