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cisd2 CDGSH iron sulfur domain 2 [ Danio rerio (zebrafish) ]

Gene ID: 393354, updated on 14-Feb-2019

Summary

Official Symbol
cisd2provided by ZNC
Official Full Name
CDGSH iron sulfur domain 2provided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-1381
See related
Ensembl:ENSDARG00000052703
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Also known as
zgc:64148
Orthologs

Genomic context

See cisd2 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
3
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 1 NC_007112.7 (43686287..43692141)
105 previous assembly GRCz10 (GCF_000002035.5) 1 NC_007112.6 (42985123..42990977)
103 previous assembly Zv9 (GCF_000002035.4) 1 NC_007112.5 (44068807..44074661)

Chromosome 1 - NC_007112.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110439713 Neighboring gene si:dkey-162b23.4 Neighboring gene succinate-CoA ligase, alpha subunit Neighboring gene 3-hydroxybutyrate dehydrogenase, type 2

Genomic regions, transcripts, and products

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General gene information

Markers

Homology

Clone Names

  • MGC64148

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
2 iron, 2 sulfur cluster binding IEA
Inferred from Electronic Annotation
more info
 
2 iron, 2 sulfur cluster binding ISS
Inferred from Sequence or Structural Similarity
more info
 
iron-sulfur cluster binding IEA
Inferred from Electronic Annotation
more info
 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
protein homodimerization activity ISS
Inferred from Sequence or Structural Similarity
more info
 
Process Evidence Code Pubs
autophagy IEA
Inferred from Electronic Annotation
more info
 
autophagy of mitochondrion ISS
Inferred from Sequence or Structural Similarity
more info
 
multicellular organism aging ISS
Inferred from Sequence or Structural Similarity
more info
 
regulation of autophagy ISS
Inferred from Sequence or Structural Similarity
more info
 
Component Evidence Code Pubs
endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 
endoplasmic reticulum membrane ISS
Inferred from Sequence or Structural Similarity
more info
 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
 
membrane IEA
Inferred from Electronic Annotation
more info
 
mitochondrial outer membrane IEA
Inferred from Electronic Annotation
more info
 
mitochondrial outer membrane ISS
Inferred from Sequence or Structural Similarity
more info
 
mitochondrion IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
CDGSH iron-sulfur domain-containing protein 2

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_200383.1NP_956677.1  CDGSH iron-sulfur domain-containing protein 2

    See identical proteins and their annotated locations for NP_956677.1

    Status: PROVISIONAL

    Source sequence(s)
    BC053280
    UniProtKB/Swiss-Prot
    Q7T326
    Related
    ENSDARP00000069092.3, ENSDART00000074604.4
    Conserved Domains (2) summary
    smart00704
    Location:81119
    ZnF_CDGSH; CDGSH-type zinc finger. Function unknown
    pfam10660
    Location:366
    MitoNEET_N; Iron-containing outer mitochondrial membrane protein N-terminus

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007112.7 Reference GRCz11 Primary Assembly

    Range
    43686287..43692141
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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