snu13a SNU13 homolog, small nuclear ribonucleoprotein a (U4/U6.U5) [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: snu13aprovided by ZNC
Official Full Name: SNU13 homolog, small nuclear ribonucleoprotein a (U4/U6.U5)provided by ZNC
Primary source: ZFIN:ZDB-GENE-040426-879
See related: Ensembl:ENSDARG00000069878 AllianceGenome:ZFIN:ZDB-GENE-040426-879
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: nhp2l1a; zgc:56066; zgc:77417
Summary: Predicted to enable RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome; maturation of LSU-rRNA; and maturation of SSU-rRNA. Predicted to act upstream of or within ribosome biogenesis. Predicted to be located in nucleolus. Predicted to be part of box C/D RNP complex; nucleus; and small-subunit processome. Orthologous to human SNU13 (small nuclear ribonucleoprotein 13). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: all
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Location:: chromosome: 3

Exon count:: 3

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	3	NC_007114.7 (58158487..58165277, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	3	NC_007114.6 (58087963..58094753, complement)

Chromosome 3 - NC_007114.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help

See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Markers

fb99c09.x1 (e-PCR)
- UniSTS:192005

fc83d07.x1 (e-PCR)
- UniSTS:194605

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables RNA binding	IBA Inferred from Biological aspect of Ancestor more info
enables RNA binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in mRNA splicing, via spliceosome	IBA Inferred from Biological aspect of Ancestor more info
involved_in maturation of SSU-rRNA	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within ribosome biogenesis	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
part_of U4/U6 x U5 tri-snRNP complex	IBA Inferred from Biological aspect of Ancestor more info
part_of box C/D methylation guide snoRNP complex	IBA Inferred from Biological aspect of Ancestor more info
is_active_in nucleolus	IBA Inferred from Biological aspect of Ancestor more info
located_in nucleolus	IEA Inferred from Electronic Annotation more info
located_in nucleus	IEA Inferred from Electronic Annotation more info
part_of precatalytic spliceosome	IBA Inferred from Biological aspect of Ancestor more info
part_of ribonucleoprotein complex	IEA Inferred from Electronic Annotation more info
part_of small-subunit processome	IBA Inferred from Biological aspect of Ancestor more info

General protein information

Go to the top of the page Help

Preferred Names: SNU13 homolog, small nuclear ribonucleoprotein a (U4/U6.U5)

Names: NHP2 non-histone chromosome protein 2-like 1a

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_200312.2 → NP_956606.1 SNU13 homolog, small nuclear ribonucleoprotein a (U4/U6.U5)

See identical proteins and their annotated locations for NP_956606.1

Status: VALIDATED

Source sequence(s)

CT583687, EH582537

UniProtKB/TrEMBL

F6P9L4, Q6NYU9, Q7ZU93

Related

ENSDARP00000087463.4, ENSDART00000093031.6

Conserved Domains (1) summary

COG1358
Location:9 → 103

Rpl7Ae; Ribosomal protein L7Ae or related RNA K-turn-binding protein [Translation, ribosomal structure and biogenesis]