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psmd6 proteasome 26S subunit, non-ATPase 6 [ Danio rerio (zebrafish) ]

Gene ID: 393261, updated on 25-Jul-2020

Summary

Official Symbol
psmd6provided by ZNC
Official Full Name
proteasome 26S subunit, non-ATPase 6provided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-1038
See related
Ensembl:ENSDARG00000070674
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:56471
Orthologs

Genomic context

See psmd6 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
8
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 11 NC_007122.7 (19502367..19511548)
105 previous assembly GRCz10 (GCF_000002035.5) 11 NC_007122.6 (19340025..19349206)
103 previous assembly Zv9 (GCF_000002035.4) 11 NC_007122.5 (19922651..19931892)

Chromosome 11 - NC_007122.7Genomic Context describing neighboring genes Neighboring gene prickle homolog 2b Neighboring gene solute carrier family 2 member 9, like 1 Neighboring gene ataxin 7 Neighboring gene THO complex 7

Genomic regions, transcripts, and products

Pathways from PubChem

General gene information

Homology

Clone Names

  • MGC56471

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enzyme regulator activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
lens fiber cell differentiation IMP
Inferred from Mutant Phenotype
more info
PubMed 
proteasome-mediated ubiquitin-dependent protein catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
proteasome-mediated ubiquitin-dependent protein catabolic process IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
proteasome complex IEA
Inferred from Electronic Annotation
more info
 
proteasome regulatory particle IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
26S proteasome non-ATPase regulatory subunit 6
Names
proteasome (prosome, macropain) 26S subunit, non-ATPase, 6
vov

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_200291.1NP_956585.1  26S proteasome non-ATPase regulatory subunit 6

    See identical proteins and their annotated locations for NP_956585.1

    Status: PROVISIONAL

    Source sequence(s)
    BC049452
    UniProtKB/TrEMBL
    Q7ZWE5
    Related
    ENSDARP00000094762.2, ENSDART00000103987.3
    Conserved Domains (3) summary
    COG5187
    Location:15379
    RPN7; 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
    pfam01399
    Location:251355
    PCI; PCI domain
    pfam10602
    Location:63236
    RPN7; 26S proteasome subunit RPN7

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007122.7 Reference GRCz11 Primary Assembly

    Range
    19502367..19511548
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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