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rnaseh2b ribonuclease H2, subunit B [ Danio rerio (zebrafish) ]

Gene ID: 393241, updated on 3-Oct-2018

Summary

Official Symbol
rnaseh2bprovided by ZNC
Official Full Name
ribonuclease H2, subunit Bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-1090
See related
Ensembl:ENSDARG00000005128 Vega:OTTDARG00000026971
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Also known as
zgc:56602
Orthologs

Genomic context

See rnaseh2b in Genome Data Viewer
Location:
chromosome: 9
Exon count:
12
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 9 NC_007120.7 (29671506..29679173)
105 previous assembly GRCz10 (GCF_000002035.5) 9 NC_007120.6 (29860771..29868502)

Chromosome 9 - NC_007120.7Genomic Context describing neighboring genes Neighboring gene microRNA 15a-2 Neighboring gene microRNA 16c Neighboring gene uncharacterized LOC110438837 Neighboring gene chromosome 9 CXorf21 homolog

Genomic regions, transcripts, and products

Pathways from BioSystems

  • DNA replication, organism-specific biosystem (from KEGG)
    DNA replication, organism-specific biosystemA complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (D...
  • DNA replication, conserved biosystem (from KEGG)
    DNA replication, conserved biosystemA complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (D...

General gene information

Markers

Homology

Clone Names

  • MGC56602

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
RNA-DNA hybrid ribonuclease activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
RNA catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
ribonucleotide metabolic process IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
nucleoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleus IEA
Inferred from Electronic Annotation
more info
 
ribonuclease H2 complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_200271.1NP_956565.1  ribonuclease H2 subunit B

    See identical proteins and their annotated locations for NP_956565.1

    Status: PROVISIONAL

    Source sequence(s)
    BC049050
    UniProtKB/TrEMBL
    Q7ZUH0
    Conserved Domains (1) summary
    cd09270
    Location:1208
    RNase_H2-B; Ribonuclease H2-B is a subunit of the eukaryotic RNase H complex which cleaves RNA-DNA hybrids

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007120.7 Reference GRCz11 Primary Assembly

    Range
    29671506..29679173
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005167681.4XP_005167738.1  ribonuclease H2 subunit B isoform X2

    Conserved Domains (1) summary
    pfam09468
    Location:17145
    RNase_H2-Ydr279; Ydr279p protein family (RNase H2 complex component)
  2. XM_021478630.1XP_021334305.1  ribonuclease H2 subunit B isoform X1

    Related
    ENSDARP00000006173.5, ENSDART00000015377.7
    Conserved Domains (1) summary
    pfam09468
    Location:17297
    RNase_H2-Ydr279; Ydr279p protein family (RNase H2 complex component)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394759.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    276943..284704
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_2

Genomic

  1. NW_018395285.1 Reference GRCz11 ALT_DRER_TU_2

    Range
    35693..43360
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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