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ORF2 VP1 [ Norovirus GII ]

Gene ID: 39105315, updated on 18-Aug-2023
Gene symbol
ORF2
Gene description
VP1
Locus tag
D9V40_gp2
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Norovirus GII (isolate: NORO_226_06_01_2016, nat-host: Homo sapiens)
Lineage
Viruses; Riboviria; Caliciviridae; Norovirus
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Sequence:
NC_039477.1 (5085..6707)

NC_039477.1Genomic Context describing neighboring genes Neighboring gene nonstructural polyprotein Neighboring gene VP2

Genomic Sequence:
NC_039477.1

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Structural basis of host ligand specificity change of GII porcine noroviruses from their closely related GII human noroviruses. Yang Y, et al. Emerg Microbes Infect, 2019. PMID 31711377, Free PMC Article
  2. The surface-exposed loop region of norovirus GII.3 VP1 plays an essential role in binding histo-blood group antigens. Zhang G, et al. Arch Virol, 2019 Jun. PMID 30968211
  3. Norovirus Transmission Dynamics in a Pediatric Hospital Using Full Genome Sequences. Brown JR, et al. Clin Infect Dis, 2019 Jan 7. PMID 29800111, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Preferred Names
VP1

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_039477.1 Reference assembly

    Range
    5085..6707
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_009518842.1 VP1 [Norovirus GII]

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A0U4W772, A0A142IJZ6, A0A1B1CUC3, A0A220QTA8, A0A2D1ANU7, A0A2U9N3W3, A0A2U9N6D7, A0A2Z5TU80, A0A3Q8R3N9, A0A3Q9IVN4, A0A3Q9IVN5, A0A3Q9IYE2, A0A3S9W5R6, A0A3S9W5U6, A0A3S9W616, A0A411PAW1, A0A482CXQ7, A0A4D5XVM5, A0A4D6BVP8, A0A4D6BYC1, A0A6G5X5N3, A0A6M3H305, S5R4F1, S5R4F5, S5R4G2, S5R4G9, S5R7G7, S5R7H3, S5RC06, S5RC17, S5RC23, S5RC35, S5RQL0, S5RQL9, S5RQM4, S5RQM9, S5RQN3, S5RT73, S5RT75, S5RT79, S5RT83, T2D287
    Conserved Domains (1) summary
    pfam00915
    Location:3 → 274
    Calici_coat; Calicivirus coat protein
Nucleotide Protein
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