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BTF3L4P3 basic transcription factor 3 like 4 pseudogene 3 [ Homo sapiens (human) ]

Gene ID: 391040, updated on 4-Mar-2025

Summary

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Official Symbol
BTF3L4P3provided by HGNC
Official Full Name
basic transcription factor 3 like 4 pseudogene 3provided by HGNC
Primary source
HGNC:HGNC:39647
See related
AllianceGenome:HGNC:39647
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See BTF3L4P3 in Genome Data Viewer
Location:
6q23.3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (137543502..137544443, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (138731952..138732893, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (137864639..137865580, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102723633 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:137744471-137745316 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25140 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:137808523-137809198 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:137814441-137814940 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:137816622-137817155 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:137817156-137817688 Neighboring gene Sharpr-MPRA regulatory region 8938 Neighboring gene oligodendrocyte transcription factor 3 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25141 Neighboring gene Sharpr-MPRA regulatory region 13388 Neighboring gene OLIG3-TNFAIP3 interval homotypic cluster of transcription factor binding sites enhancer Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_90427 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25142 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17583 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25143 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17584 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17585 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_90442 Neighboring gene NANOG hESC enhancer GRCh37_chr6:137974082-137974598 Neighboring gene uncharacterized LOC105378018 Neighboring gene long intergenic non-protein coding RNA 3004 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr6:138002130-138003329 Neighboring gene uncharacterized LOC124901411 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_90467 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr6:138020371-138021570

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multiple common variants for celiac disease influencing immune gene expression. Dubois PC, et al. Nat Genet, 2010 Apr. PMID 20190752, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_030609.1 

    Range
    101..1042
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    137543502..137544443 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    138731952..138732893 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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