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C1QL3 complement C1q like 3 [ Homo sapiens (human) ]

Gene ID: 389941, updated on 21-Dec-2019

Summary

Official Symbol
C1QL3provided by HGNC
Official Full Name
complement C1q like 3provided by HGNC
Primary source
HGNC:HGNC:19359
See related
Ensembl:ENSG00000165985 MIM:615227
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C1ql; K100; CTRP13; C1QTNF13
Expression
Biased expression in brain (RPKM 20.3), kidney (RPKM 2.3) and 3 other tissues See more
Orthologs

Genomic context

See C1QL3 in Genome Data Viewer
Location:
10p13
Exon count:
2
Annotation release Status Assembly Chr Location
109.20191205 current GRCh38.p13 (GCF_000001405.39) 10 NC_000010.11 (16513734..16521879, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (16555742..16564004, complement)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 2654 Neighboring gene phosphotriesterase related Neighboring gene RNA, U2 small nuclear 18, pseudogene Neighboring gene uncharacterized LOC101928701 Neighboring gene Sharpr-MPRA regulatory region 4915 Neighboring gene Ras suppressor protein 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
identical protein binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
regulation of synapse organization IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
collagen trimer IEA
Inferred from Electronic Annotation
more info
 
extracellular region IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
complement C1q-like protein 3
Names
C1q and tumor necrosis factor-related protein 13
C1q/TNF-related protein 13
complement component 1, q subcomponent-like 3

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001010908.2NP_001010908.1  complement C1q-like protein 3 precursor

    See identical proteins and their annotated locations for NP_001010908.1

    Status: VALIDATED

    Source sequence(s)
    AL353576, AL360230
    Consensus CDS
    CCDS31156.1
    UniProtKB/Swiss-Prot
    Q5VWW1
    Related
    ENSP00000298943.3, ENST00000298943.4
    Conserved Domains (1) summary
    pfam00386
    Location:128252
    C1q; C1q domain

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20191205

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p13 Primary Assembly

    Range
    16513734..16521879 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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