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ZCCHC13 zinc finger CCHC-type containing 13 [ Homo sapiens (human) ]

Gene ID: 389874, updated on 23-Nov-2021

Summary

Official Symbol
ZCCHC13provided by HGNC
Official Full Name
zinc finger CCHC-type containing 13provided by HGNC
Primary source
HGNC:HGNC:31749
See related
Ensembl:ENSG00000187969
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CNBP2; ZNF9L
Summary
This gene appears to represent an intronless retrocopy of a related multi-exon gene located on chromosome 3. However, the CDS of this intronless gene remains relatively intact, it is conserved in other mammalian species, it is known to be transcribed, and it is therefore thought to encode a functional protein. The encoded protein contains six CCHC-type zinc fingers, and is thus thought to function as a transcription factor. [provided by RefSeq, May 2010]
Orthologs
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Genomic context

See ZCCHC13 in Genome Data Viewer
Location:
Xq13.2
Exon count:
1
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) X NC_000023.11 (74304180..74305034)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (73524015..73524869)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene FTX transcript, XIST regulator Neighboring gene microRNA 374a Neighboring gene microRNA 545 Neighboring gene NSL1, MIND kinetochore complex component, homolog (S. cerevisiae) pseudogene Neighboring gene ribosomal protein S6 pseudogene 26

Genomic regions, transcripts, and products

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables mRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables single-stranded RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables translation regulator activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in positive regulation of cytoplasmic translation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
zinc finger CCHC domain-containing protein 13
Names
zinc finger, CCHC domain containing 13

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_021228.1 RefSeqGene

    Range
    4991..5845
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_203303.3NP_976048.1  zinc finger CCHC domain-containing protein 13

    See identical proteins and their annotated locations for NP_976048.1

    Status: REVIEWED

    Source sequence(s)
    AC004386, BC021176, BX109166
    Consensus CDS
    CCDS14425.1
    UniProtKB/Swiss-Prot
    Q8WW36
    Related
    ENSP00000345633.2, ENST00000339534.4
    Conserved Domains (1) summary
    PTZ00368
    Location:46147
    PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p13 Primary Assembly

    Range
    74304180..74305034
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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