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AJM1 apical junction component 1 homolog [ Homo sapiens (human) ]

Gene ID: 389813, updated on 16-Oct-2021

Summary

Official Symbol
AJM1provided by HGNC
Official Full Name
apical junction component 1 homologprovided by HGNC
Primary source
HGNC:HGNC:37284
See related
Ensembl:ENSG00000232434
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
ajm-1; C9orf172
Orthologs
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Genomic context

See AJM1 in Genome Data Viewer
Location:
9q34.3
Exon count:
3
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 9 NC_000009.12 (136842478..136848801)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (139736930..139741797)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene RAB, member RAS oncogene family like 6 Neighboring gene nucleolin pseudogene 1 Neighboring gene microRNA 4292 Neighboring gene Sharpr-MPRA regulatory region 13741 Neighboring gene phosphohistidine phosphatase 1 Neighboring gene MAM domain containing 4

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

Gene Ontology Provided by GOA

Process Evidence Code Pubs
involved_in cell-cell junction organization IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
located_in adherens junction IEA
Inferred from Electronic Annotation
more info
 
is_active_in apical junction complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in apical plasma membrane IEA
Inferred from Electronic Annotation
more info
 
located_in cilium IEA
Inferred from Electronic Annotation
more info
 
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
apical junction component 1 homolog
Names
uncharacterized protein C9orf172

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001080482.5NP_001073951.2  apical junction component 1 homolog

    See identical proteins and their annotated locations for NP_001073951.2

    Status: VALIDATED

    Source sequence(s)
    AL355987
    Consensus CDS
    CCDS48059.1
    UniProtKB/Swiss-Prot
    C9J069
    Related
    ENSP00000412388.1, ENST00000436881.2
    Conserved Domains (2) summary
    PHA03247
    Location:247655
    PHA03247; large tegument protein UL36; Provisional
    pfam01753
    Location:668710
    zf-MYND; MYND finger

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p13 Primary Assembly

    Range
    136842478..136848801
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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