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LCN15 lipocalin 15 [ Homo sapiens (human) ]

Gene ID: 389812, updated on 13-May-2022

Summary

Official Symbol
LCN15provided by HGNC
Official Full Name
lipocalin 15provided by HGNC
Primary source
HGNC:HGNC:33777
See related
Ensembl:ENSG00000177984 AllianceGenome:HGNC:33777
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
PRO6093; UNQ2541
Summary
Predicted to enable small molecule binding activity. Predicted to be located in extracellular region. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in duodenum (RPKM 4.8), colon (RPKM 2.3) and 2 other tissues See more
Orthologs
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Genomic context

See LCN15 in Genome Data Viewer
Location:
9q34.3
Exon count:
7
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (136759634..136764518, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (148992812..148997698, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (139654086..139658970, complement)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100128593 Neighboring gene lipocalin 6 Neighboring gene microRNA 6722 Neighboring gene lipocalin 8 Neighboring gene uncharacterized LOC107987143 Neighboring gene Sharpr-MPRA regulatory region 7361

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables small molecule binding IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
lipocalin-15
Names
MSFL2541
NP_976222.1
XP_011516974.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_203347.2NP_976222.1  lipocalin-15 precursor

    See identical proteins and their annotated locations for NP_976222.1

    Status: VALIDATED

    Source sequence(s)
    AL355987, AY358618
    Consensus CDS
    CCDS7006.1
    UniProtKB/Swiss-Prot
    Q6UWW0
    Related
    ENSP00000313833.5, ENST00000316144.6
    Conserved Domains (1) summary
    pfam00061
    Location:34174
    Lipocalin; Lipocalin / cytosolic fatty-acid binding protein family

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    136759634..136764518 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011518672.2XP_011516974.1  lipocalin-15 isoform X1

    Conserved Domains (1) summary
    pfam00061
    Location:6131
    Lipocalin; Lipocalin / cytosolic fatty-acid binding protein family

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    148992812..148997698 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)