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SPATA31D4 SPATA31 subfamily D member 4 [ Homo sapiens (human) ]

Gene ID: 389761, updated on 22-Sep-2022

Summary

Official Symbol
SPATA31D4provided by HGNC
Official Full Name
SPATA31 subfamily D member 4provided by HGNC
Primary source
HGNC:HGNC:38601
See related
Ensembl:ENSG00000189357 AllianceGenome:HGNC:38601
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
FAM75D3; FAM75D4; SPATA31D3
Summary
Predicted to be involved in cell differentiation and spermatogenesis. Predicted to be integral component of membrane. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward testis (RPKM 5.6) See more
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Genomic context

See SPATA31D4 in Genome Data Viewer
Location:
9q21.32
Exon count:
4
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (81928428..81934998)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (94078055..94084645)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (84543343..84549913)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105376108 Neighboring gene uncharacterized LOC124902187 Neighboring gene SPATA31 subfamily D member 5, pseudogene Neighboring gene SPATA31 subfamily D member 3 Neighboring gene SPATA31 subfamily D member 2, pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Homology

Clone Names

  • FLJ43859

Gene Ontology Provided by GOA

Process Evidence Code Pubs
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 
involved_in spermatogenesis IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
spermatogenesis-associated protein 31D4
Names
FAM75-like protein FLJ43859
Protein FAM75D3
Spermatogenesis-associated protein 31D3
family with sequence similarity 75, member D4
putative protein FAM75D4
putative spermatogenesis-associated protein 31D4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001145197.1NP_001138669.1  spermatogenesis-associated protein 31D4

    Status: VALIDATED

    Source sequence(s)
    AK125847, AL158154
    Consensus CDS
    CCDS83379.1
    UniProtKB/Swiss-Prot
    A0A0J9YX51, Q6ZUB0
    UniProtKB/TrEMBL
    A0A0J9YX51
    Related
    ENSP00000488251.1, ENST00000419782.5
    Conserved Domains (2) summary
    pfam14650
    Location:481851
    FAM75; FAM75 family
    pfam15371
    Location:66156
    DUF4599; Domain of unknown function (DUF4599)

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    81928428..81934998
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    94078055..94084645
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_207415.1: Suppressed sequence

    Description
    NM_207415.1: This RefSeq was suppressed temporarily based on the calculation that the annotated protein was shorter than a protein or proteins from a putative ortholog.