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GLIDR glioblastoma down-regulated RNA [ Homo sapiens (human) ]

Gene ID: 389741, updated on 1-Jun-2020

Summary

Official Symbol
GLIDRprovided by HGNC
Official Full Name
glioblastoma down-regulated RNAprovided by HGNC
Primary source
HGNC:HGNC:48823
See related
Ensembl:ENSG00000278175
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
LINC01172; TCONS_00015562
Expression
Ubiquitous expression in thyroid (RPKM 3.8), brain (RPKM 3.6) and 25 other tissues See more

Genomic context

See GLIDR in Genome Data Viewer
Location:
9p12
Exon count:
3
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 9 NC_000009.12 (39803496..39810159, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (41952373..41955136, complement)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene RBPJ pseudogene 5 Neighboring gene CNTNAP3 pseudogene 6 Neighboring gene fibroblast growth factor 7 pseudogene 3 Neighboring gene uncharacterized LOC554249 Neighboring gene RNA, 7SL, cytoplasmic 763, pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Other Names

  • long intergenic non-protein coding RNA 1172

Clone Names

  • MGC21881

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_015363.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    BX664615
    Related
    ENST00000618092.2
  2. NR_126044.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice site in the 3' exon, and terminates early and is shorter than variant 1.
    Source sequence(s)
    BX664615
    Related
    ENST00000660231.1
  3. NR_126045.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) uses an alternate splice site and lacks an internal segment, and terminates early and is shorter than variant 1.
    Source sequence(s)
    BX664615
    Related
    ENST00000627065.2
  4. NR_126046.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) differs at both the 5' and 3' ends, and is shorter than variant 1.
    Source sequence(s)
    BC019880, BX664615

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p13 Primary Assembly

    Range
    39803496..39810159 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_203448.1: Suppressed sequence

    Description
    NM_203448.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
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