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SPATA31F2P SPATA31 subfamily F member 2, pseudogene [ Homo sapiens (human) ]

Gene ID: 389715, updated on 26-Jan-2023

Summary

Official Symbol
SPATA31F2Pprovided by HGNC
Official Full Name
SPATA31 subfamily F member 2, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:24504
See related
AllianceGenome:HGNC:24504
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
FAM205B; C9orf144; FAM205BP; C9orf144A
Expression
Restricted expression toward testis (RPKM 8.8) See more
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Genomic context

See SPATA31F2P in Genome Data Viewer
Location:
9p13.3
Exon count:
4
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (34830267..34838586, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (34849306..34857624, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (34830264..34838583, complement)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene PHD finger protein 24 Neighboring gene SPATA31 subfamily F member 1 Neighboring gene C-C motif chemokine ligand 21 Neighboring gene SPATA31 subfamily F member 3 Neighboring gene glutamate-ammonia ligase pseudogene 4

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Other Names

  • family with sequence similarity 205 member B, pseudogene
  • transmembrane protein C9orf144B pseudogene

Clone Names

  • DKFZp434J193

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_024481.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK128180, AL162231, AL589645, BX648118

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    34830267..34838586 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    34849306..34857624 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001126494.1: Suppressed sequence

    Description
    NM_001126494.1: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.