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RPSAP47 ribosomal protein SA pseudogene 47 [ Homo sapiens (human) ]

Gene ID: 389672, updated on 10-Dec-2024

Summary

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Official Symbol
RPSAP47provided by HGNC
Official Full Name
ribosomal protein SA pseudogene 47provided by HGNC
Primary source
HGNC:HGNC:36162
See related
Ensembl:ENSG00000188856 AllianceGenome:HGNC:36162
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RPSA_19_921
Summary
Although this locus has an open reading frame that could produce a protein of the same or nearly the same size as that of the RPSA gene, there is no convincing evidence of transcription. It is thus being annotated as a pseudogene.[provided by RefSeq, Feb 2009]
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Genomic context

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See RPSAP47 in Genome Data Viewer
Location:
8q21.13
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (80558794..80559827)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (80990383..80991416)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (81471029..81472062)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27568 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:81398027-81398597 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:81398598-81399168 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19324 Neighboring gene zinc finger and BTB domain containing 10 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:81415452-81415952 Neighboring gene long intergenic non-protein coding RNA 2986 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr8:81470238-81471437 Neighboring gene NANOG hESC enhancer GRCh37_chr8:81475570-81476230 Neighboring gene RNA, U7 small nuclear 174 pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:81477806-81478340 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:81478341-81478873 Neighboring gene OCIA domain containing 2 pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Duffy-null-associated low neutrophil counts influence HIV-1 susceptibility in high-risk South African black women. Ramsuran V, et al. Clin Infect Dis, 2011 May. PMID 21507922, Free PMC Article
  2. Novel associations for hypothyroidism include known autoimmune risk loci. Eriksson N, et al. PLoS One, 2012. PMID 22493691, Free PMC Article
  3. The sequence of the human genome. Venter JC, et al. Science, 2001 Feb 16. PMID 11181995
  4. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. Balasubramanian S, et al. Genome Biol, 2009. PMID 19123937, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
Duffy-null-associated low neutrophil counts influence HIV-1 susceptibility in high-risk South African black women.
EBI GWAS Catalog
Novel associations for hypothyroidism include known autoimmune risk loci.
EBI GWAS Catalog

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_010220.4 

    Range
    101..1134
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    80558794..80559827
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    80990383..80991416
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001089588.1: Suppressed sequence

    Description
    NM_001089588.1: This RefSeq was permanently suppressed because this locus does not appear to be transcribed.
Nucleotide Protein
Heading Accession and Version

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