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LINC03042 long intergenic non-protein coding RNA 3042 [ Homo sapiens (human) ]

Gene ID: 389649, updated on 1-Jun-2022

Summary

Official Symbol
LINC03042provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 3042provided by HGNC
Primary source
HGNC:HGNC:33774
See related
Ensembl:ENSG00000196166 AllianceGenome:HGNC:33774
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C8orf86
Expression
Low expression observed in reference dataset See more
Orthologs
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Genomic context

See LINC03042 in Genome Data Viewer
Location:
8p11.22
Exon count:
3
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (38510834..38528662, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (38787751..38805650, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (38368352..38386180, complement)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene fibroblast growth factor receptor 1 Neighboring gene ribosomal protein S20 pseudogene 22 Neighboring gene Sharpr-MPRA regulatory region 7766 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr8:38385147-38386346 Neighboring gene Sharpr-MPRA regulatory region 511 Neighboring gene uncharacterized LOC124901935

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

Other Names

  • uncharacterized protein C8orf86

Clone Names

  • FLJ43582

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_167676.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC069120, AC087623
    Related
    ENST00000649111.1

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    38510834..38528662 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    38787751..38805650 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001303531.1: Suppressed sequence

    Description
    NM_001303531.1: This RefSeq was removed because it is now thought that this gene does not encode a protein.
  2. NM_001369353.1: Suppressed sequence

    Description
    NM_001369353.1: This RefSeq was removed because it is now thought that this gene does not encode a protein.
  3. NM_001369354.1: Suppressed sequence

    Description
    NM_001369354.1: This RefSeq was removed because it is now thought that this gene does not encode a protein.
  4. NM_001369355.1: Suppressed sequence

    Description
    NM_001369355.1: This RefSeq was removed because it is now thought that this gene does not encode a protein.
  5. NM_207412.2: Suppressed sequence

    Description
    NM_207412.2: This RefSeq was removed because it is now thought that this gene does not encode a protein.