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MIR99AHG mir-99a-let-7c cluster host gene [ Homo sapiens (human) ]

Gene ID: 388815, updated on 30-Oct-2022

Summary

Official Symbol
MIR99AHGprovided by HGNC
Official Full Name
mir-99a-let-7c cluster host geneprovided by HGNC
Primary source
HGNC:HGNC:1274
See related
Ensembl:ENSG00000215386 MIM:615964; AllianceGenome:HGNC:1274
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
MONC; DILA1; C21orf34; C21orf35; LINC00478
Expression
Broad expression in brain (RPKM 3.1), ovary (RPKM 3.0) and 17 other tissues See more
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Genomic context

See MIR99AHG in Genome Data Viewer
Location:
21q21.1
Exon count:
18
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 21 NC_000021.9 (16070488..16631727)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 21 NC_060945.1 (14425873..14987212)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 21 NC_000021.8 (17442808..18004046)

Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 8522 Neighboring gene ubiquitin specific peptidase 25 Neighboring gene RNA, U6 small nuclear 426, pseudogene Neighboring gene VDAC2 pseudogene 1 Neighboring gene ribosomal protein S26 pseudogene 5 Neighboring gene VISTA enhancer hs1304 Neighboring gene small nucleolar RNA, C/D box 74B Neighboring gene VISTA enhancer hs1441 Neighboring gene microRNA let-7c Neighboring gene microRNA 99a Neighboring gene microRNA 125b-2 Neighboring gene RNA, U1 small nuclear 98, pseudogene Neighboring gene uncharacterized LOC124904998

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Phenotypes

EBI GWAS Catalog

Description
A genome wide association study (GWAS) providing evidence of an association between common genetic variants and late radiotherapy toxicity.
EBI GWAS Catalog
Family-based genome-wide association scan of attention-deficit/hyperactivity disorder.
EBI GWAS Catalog
Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.
EBI GWAS Catalog
Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
EBI GWAS Catalog

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Other Names

  • Cyclin D1-interacting long noncoding RNA 1
  • long intergenic non-protein coding RNA 478
  • megakaryocytic oncogenic non-coding RNA
  • mir-99a-let-7c cluster host gene (non-protein coding)

Clone Names

  • FLJ38295

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_027790.3 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK095614, AP000473, KF511330
  2. NR_027791.3 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP000473, BC130602, CF135139, KF511330
    Related
    ENST00000657710.2
  3. NR_111004.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP000473, CN313455, KF511330
    Related
    ENST00000660908.2
  4. NR_111005.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AF486622, AP000473, AP001344, KF511330
    Related
    ENST00000656642.3
  5. NR_136541.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP000473, AP000962, AP001172, AP001343, AP001344, AP001346
    Related
    ENST00000698109.1
  6. NR_136542.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP000473, AP000962, AP001172, AP001343, AP001344, AP001346, KF511330
    Related
    ENST00000698110.1
  7. NR_136543.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP000473, AP000962, AP001172, AP001343, AP001346, KF511330
    Related
    ENST00000670980.2
  8. NR_136544.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP000473, AP000962, AP001172, KF454942, KF511330
    Related
    ENST00000664445.2
  9. NR_136545.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP000473, AP000962, AP001172, KF454942, KF511330
    Related
    ENST00000453910.7
  10. NR_136546.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP000473, AP000962, AP001172, KF454942, KF511330
  11. NR_136547.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP000473, AP000962, KF511330
  12. NR_136548.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP000473, AP000962, KF511330
    Related
    ENST00000698096.1
  13. NR_136549.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP000473, AP000962, KF511330
    Related
    ENST00000661939.2
  14. NR_136550.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP000473, AP000962, AP001172, KF511330
    Related
    ENST00000657520.2
  15. NR_136551.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP000473, AP000962, AP001172, AP001343, AP001346, KF511330
    Related
    ENST00000697942.1
  16. NR_136552.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP000473, AP000962, AP001172, AP001343, AP001346, KF511330
    Related
    ENST00000698166.1

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000021.9 Reference GRCh38.p14 Primary Assembly

    Range
    16070488..16631727
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060945.1 Alternate T2T-CHM13v2.0

    Range
    14425873..14987212
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)