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C1orf189 chromosome 1 open reading frame 189 [ Homo sapiens (human) ]

Gene ID: 388701, updated on 7-Jun-2020

Summary

Official Symbol
C1orf189provided by HGNC
Official Full Name
chromosome 1 open reading frame 189provided by HGNC
Primary source
HGNC:HGNC:32305
See related
Ensembl:ENSG00000163263
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 7.3) See more
Orthologs

Genomic context

See C1orf189 in Genome Data Viewer
Location:
1q21.3
Exon count:
4
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 1 NC_000001.11 (154199085..154206333, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (154171561..154178841, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene tropomyosin 3 Neighboring gene RNA, 7SL, cytoplasmic 431, pseudogene Neighboring gene microRNA 190b Neighboring gene chromosome 1 open reading frame 43 Neighboring gene ubiquitin associated protein 2 like Neighboring gene small nucleolar RNA, H/ACA box 58B

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 

General protein information

Preferred Names
uncharacterized protein C1orf189

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001010979.3NP_001010979.1  uncharacterized protein C1orf189

    See identical proteins and their annotated locations for NP_001010979.1

    Status: VALIDATED

    Source sequence(s)
    AI052706, HY025946
    Consensus CDS
    CCDS30876.1
    UniProtKB/Swiss-Prot
    Q5VU69
    Related
    ENSP00000357511.3, ENST00000368525.4
    Conserved Domains (1) summary
    pfam15104
    Location:19100
    DUF4558; Domain of unknown function (DUF4558)

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p13 Primary Assembly

    Range
    154199085..154206333 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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