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TRNP1 TMF1 regulated nuclear protein 1 [ Homo sapiens (human) ]

Gene ID: 388610, updated on 13-Mar-2020

Summary

Official Symbol
TRNP1provided by HGNC
Official Full Name
TMF1 regulated nuclear protein 1provided by HGNC
Primary source
HGNC:HGNC:34348
See related
Ensembl:ENSG00000253368 MIM:616824
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TNRP; TRNP; C1orf225
Expression
Biased expression in stomach (RPKM 40.7), esophagus (RPKM 17.0) and 7 other tissues See more
Orthologs

Genomic context

See TRNP1 in Genome Data Viewer
Location:
1p36.11
Exon count:
2
Annotation release Status Assembly Chr Location
109.20200228 current GRCh38.p13 (GCF_000001405.39) 1 NC_000001.11 (26993663..27000891)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (27320189..27327377)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 6295 Neighboring gene oligosaccharyltransferase complex subunit pseudogene 2 Neighboring gene Sharpr-MPRA regulatory region 4179 Neighboring gene terminal nucleotidyltransferase 5B Neighboring gene uncharacterized LOC101928391

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
DNA binding ISS
Inferred from Sequence or Structural Similarity
more info
 
Process Evidence Code Pubs
cell cycle IEA
Inferred from Electronic Annotation
more info
 
cerebellar cortex morphogenesis ISS
Inferred from Sequence or Structural Similarity
more info
 
neural precursor cell proliferation ISS
Inferred from Sequence or Structural Similarity
more info
 
regulation of cell cycle ISS
Inferred from Sequence or Structural Similarity
more info
 
regulation of cell proliferation ISS
Inferred from Sequence or Structural Similarity
more info
 
Component Evidence Code Pubs
colocalizes_with nuclear euchromatin ISS
Inferred from Sequence or Structural Similarity
more info
 
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleus ISS
Inferred from Sequence or Structural Similarity
more info
 

General protein information

Preferred Names
TMF-regulated nuclear protein 1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001013642.3NP_001013664.2  TMF-regulated nuclear protein 1

    Status: VALIDATED

    Source sequence(s)
    AL356390
    Consensus CDS
    CCDS41289.1
    Related
    ENSP00000429216.2, ENST00000522111.3
    Conserved Domains (1) summary
    cl22856
    Location:110171
    SNARE; SNARE motif

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p13 Primary Assembly

    Range
    26993663..27000891
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005245867.3XP_005245924.1  TMF-regulated nuclear protein 1 isoform X1

    See identical proteins and their annotated locations for XP_005245924.1

    UniProtKB/Swiss-Prot
    Q6NT89
    Conserved Domains (1) summary
    cl22856
    Location:110171
    SNARE; SNARE motif
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