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ZNF790 zinc finger protein 790 [ Homo sapiens (human) ]

Gene ID: 388536, updated on 13-May-2022

Summary

Official Symbol
ZNF790provided by HGNC
Official Full Name
zinc finger protein 790provided by HGNC
Primary source
HGNC:HGNC:33114
See related
Ensembl:ENSG00000197863 AllianceGenome:HGNC:33114
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in thyroid (RPKM 1.2), kidney (RPKM 1.1) and 25 other tissues See more
Orthologs
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Genomic context

See ZNF790 in Genome Data Viewer
Location:
19q13.12
Exon count:
10
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (36817428..36850792, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (39493114..39526474, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (37308330..37341694, complement)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene zinc finger protein 850 Neighboring gene uncharacterized LOC728485 Neighboring gene ZNF790 antisense RNA 1 Neighboring gene zinc finger protein 345 Neighboring gene zinc finger protein 829 Neighboring gene ribosomal protein L31 pseudogene 61 Neighboring gene zinc finger protein 568

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ20350, MGC62100

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001242800.2NP_001229729.1  zinc finger protein 790

    See identical proteins and their annotated locations for NP_001229729.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) represents a distinct first exon and 5' UTR.
    Source sequence(s)
    AC008733, AC020928, AK297474, DC308617, EL735861
    Consensus CDS
    CCDS12496.1
    UniProtKB/Swiss-Prot
    Q6PG37
    UniProtKB/TrEMBL
    B4DMI3
    Related
    ENSP00000480764.1, ENST00000613249.4
    Conserved Domains (3) summary
    smart00349
    Location:564
    KRAB; krueppel associated box
    COG5048
    Location:308575
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:284304
    ZF_C2H2; C2H2 Zn finger [structural motif]
  2. NM_001242801.2NP_001229730.1  zinc finger protein 790

    See identical proteins and their annotated locations for NP_001229730.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) represents a distinct first exon and 5' UTR.
    Source sequence(s)
    AC020928, AK297474, BF132049, DC307556, DC352882, DC377558
    Consensus CDS
    CCDS12496.1
    UniProtKB/Swiss-Prot
    Q6PG37
    UniProtKB/TrEMBL
    B4DMI3
    Related
    ENSP00000480834.1, ENST00000614179.4
    Conserved Domains (3) summary
    smart00349
    Location:564
    KRAB; krueppel associated box
    COG5048
    Location:308575
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:284304
    ZF_C2H2; C2H2 Zn finger [structural motif]
  3. NM_001242802.2NP_001229731.1  zinc finger protein 790

    See identical proteins and their annotated locations for NP_001229731.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) represents a distinct first exon and 5' UTR.
    Source sequence(s)
    AC020928, AK297474, DC324605
    Consensus CDS
    CCDS12496.1
    UniProtKB/Swiss-Prot
    Q6PG37
    UniProtKB/TrEMBL
    B4DMI3
    Related
    ENSP00000478852.1, ENST00000615484.4
    Conserved Domains (3) summary
    smart00349
    Location:564
    KRAB; krueppel associated box
    COG5048
    Location:308575
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:284304
    ZF_C2H2; C2H2 Zn finger [structural motif]
  4. NM_206894.4NP_996777.2  zinc finger protein 790

    See identical proteins and their annotated locations for NP_996777.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents a distinct first exon.
    Source sequence(s)
    AC020928, AK297474, BM473790
    Consensus CDS
    CCDS12496.1
    UniProtKB/Swiss-Prot
    Q6PG37
    UniProtKB/TrEMBL
    B4DMI3
    Related
    ENSP00000349161.3, ENST00000356725.9
    Conserved Domains (3) summary
    smart00349
    Location:564
    KRAB; krueppel associated box
    COG5048
    Location:308575
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:284304
    ZF_C2H2; C2H2 Zn finger [structural motif]

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

    Range
    36817428..36850792 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047438800.1XP_047294756.1  zinc finger protein 790 isoform X2

  2. XM_005258903.6XP_005258960.1  zinc finger protein 790 isoform X2

    See identical proteins and their annotated locations for XP_005258960.1

    UniProtKB/Swiss-Prot
    Q6PG37
    Conserved Domains (3) summary
    smart00349
    Location:564
    KRAB; krueppel associated box
    COG5048
    Location:308575
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:284304
    ZF_C2H2; C2H2 Zn finger [structural motif]
  3. XM_047438799.1XP_047294755.1  zinc finger protein 790 isoform X2

  4. XM_011526950.4XP_011525252.1  zinc finger protein 790 isoform X2

    See identical proteins and their annotated locations for XP_011525252.1

    UniProtKB/Swiss-Prot
    Q6PG37
    Conserved Domains (3) summary
    smart00349
    Location:564
    KRAB; krueppel associated box
    COG5048
    Location:308575
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:284304
    ZF_C2H2; C2H2 Zn finger [structural motif]
  5. XM_047438801.1XP_047294757.1  zinc finger protein 790 isoform X2

  6. XM_047438798.1XP_047294754.1  zinc finger protein 790 isoform X1

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060943.1 Alternate T2T-CHM13v2.0

    Range
    39493114..39526474 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)