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RPSA2 ribosomal protein SA 2 [ Homo sapiens (human) ]

Gene ID: 388524, updated on 4-Nov-2022

Summary

Official Symbol
RPSA2provided by HGNC
Official Full Name
ribosomal protein SA 2provided by HGNC
Primary source
HGNC:HGNC:36809
See related
Ensembl:ENSG00000288920 AllianceGenome:HGNC:36809
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RPSAP58; RPSA_30_1642
Expression
Ubiquitous expression in ovary (RPKM 296.8), lymph node (RPKM 201.6) and 25 other tissues See more
Orthologs
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Genomic context

See RPSA2 in Genome Data Viewer
Location:
19p12
Exon count:
11
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (23758496..23871188)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (23898911..24016747)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (23941298..24053990)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene zinc finger protein 675 Neighboring gene vomeronasal 1 receptor 94 pseudogene Neighboring gene zinc finger protein 681 Neighboring gene BCL2 interacting protein 3 pseudogene 39 Neighboring gene uncharacterized LOC124904677 Neighboring gene zinc finger protein 726 pseudogene 1 Neighboring gene zinc finger protein 726 Neighboring gene uncharacterized LOC100505851

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

General protein information

Preferred Names
ribosomal protein SA pseudogene 58

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001355283.3NP_001342212.1  ribosomal protein SA pseudogene 58

    Status: VALIDATED

    Source sequence(s)
    AC139769, KF495804
    Consensus CDS
    CCDS92575.1
    UniProtKB/TrEMBL
    A0A8I5KQE6
    Related
    ENSP00000509526.1, ENST00000484897.4
    Conserved Domains (1) summary
    PTZ00254
    Location:1250
    PTZ00254; 40S ribosomal protein SA; Provisional
  2. NM_001355287.3NP_001342216.1  ribosomal protein SA pseudogene 58

    Status: VALIDATED

    Source sequence(s)
    AC139769, KF495804
    Consensus CDS
    CCDS92575.1
    UniProtKB/TrEMBL
    A0A8I5KQE6
    Conserved Domains (1) summary
    PTZ00254
    Location:1250
    PTZ00254; 40S ribosomal protein SA; Provisional
  3. NM_001387845.1NP_001374774.1  ribosomal protein SA pseudogene 58

    Status: VALIDATED

    Source sequence(s)
    AC139769, KF495804
    Consensus CDS
    CCDS92575.1
    UniProtKB/TrEMBL
    A0A8I5KQE6
    Conserved Domains (1) summary
    PTZ00254
    Location:1250
    PTZ00254; 40S ribosomal protein SA; Provisional
  4. NM_001387846.1NP_001374775.1  ribosomal protein SA pseudogene 58

    Status: VALIDATED

    Source sequence(s)
    AC139769, KF495804
    Consensus CDS
    CCDS92575.1
    UniProtKB/TrEMBL
    A0A8I5KQE6
    Conserved Domains (1) summary
    PTZ00254
    Location:1250
    PTZ00254; 40S ribosomal protein SA; Provisional

RNA

  1. NR_149350.3 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks the entire ribosomal protein SA coding region but overlaps a region that encodes zinc finger repeats.
    Source sequence(s)
    AC139769, KF495804
    Related
    ENST00000689525.1
  2. NR_149351.3 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) lacks the entire ribosomal protein SA coding region but overlaps a region that encodes zinc finger repeats.
    Source sequence(s)
    AC139769, KF495804
  3. NR_149352.3 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5) lacks the entire ribosomal protein SA coding region but overlaps a region that encodes zinc finger repeats.
    Source sequence(s)
    AC139769, KF495804
  4. NR_170708.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC139769, KF495804
  5. NR_170709.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC139769, KF495804
    Related
    ENST00000475499.2
  6. NR_170710.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC139769, KF495804
  7. NR_170711.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC139769, KF495804
  8. NR_170712.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC139769, KF495804
    Related
    ENST00000692590.1
  9. NR_170713.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC139769, KF495804
  10. NR_170714.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC139769

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

    Range
    23758496..23871188
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060943.1 Alternate T2T-CHM13v2.0

    Range
    23898911..24016747
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001005472.1: Suppressed sequence

    Description
    NM_001005472.1: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.