U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LINC00671 long intergenic non-protein coding RNA 671 [ Homo sapiens (human) ]

Gene ID: 388387, updated on 22-Oct-2024

Summary

Official Symbol
LINC00671provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 671provided by HGNC
Primary source
HGNC:HGNC:44339
See related
Ensembl:ENSG00000213373 AllianceGenome:HGNC:44339
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in kidney (RPKM 11.1), bone marrow (RPKM 3.7) and 2 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See LINC00671 in Genome Data Viewer
Location:
17q21.31
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (42874674..42898734, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (43731818..43755877, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (41026691..41050751, complement)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene amine oxidase copper containing 3 Neighboring gene amine oxidase copper containing 4, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:41029817-41030346 Neighboring gene HNF1 motif-containing MPRA enhancer 258 Neighboring gene RNA, U6 small nuclear 287, pseudogene Neighboring gene glucose-6-phosphatase catalytic subunit 1 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr17:41069082-41069840 Neighboring gene H3K27ac hESC enhancer GRCh37_chr17:41080466-41081042 Neighboring gene RNY4 pseudogene 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_027254.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC016889, AK055784, BC122868, DC361857
    Related
    ENST00000301683.8

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    42874674..42898734 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    43731818..43755877 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_207388.1: Suppressed sequence

    Description
    NM_207388.1: This RefSeq was permanently suppressed because there is no support for the protein and it is a nonsense-mediated mRNA decay (NMD candidate.