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C17orf98 chromosome 17 open reading frame 98 [ Homo sapiens (human) ]

Gene ID: 388381, updated on 18-Aug-2020

Summary

Official Symbol
C17orf98provided by HGNC
Official Full Name
chromosome 17 open reading frame 98provided by HGNC
Primary source
HGNC:HGNC:34492
See related
Ensembl:ENSG00000275489
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 5.5) See more
Orthologs

Genomic context

See C17orf98 in Genome Data Viewer
Location:
17q12
Exon count:
3
Annotation release Status Assembly Chr Location
109.20200815 current GRCh38.p13 (GCF_000001405.39) 17 NC_000017.11 (38835086..38841438, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (36991341..36997642, complement)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene CWC25 spliceosome associated protein homolog Neighboring gene microRNA 4727 Neighboring gene ribosomal protein L23 Neighboring gene small nucleolar RNA, H/ACA box 21B Neighboring gene small nucleolar RNA, H/ACA box 21

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

General protein information

Preferred Names
uncharacterized protein C17orf98

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001080465.3NP_001073934.1  uncharacterized protein C17orf98

    See identical proteins and their annotated locations for NP_001073934.1

    Status: VALIDATED

    Source sequence(s)
    AC006449, AW182930, DY654789
    Consensus CDS
    CCDS42310.1
    UniProtKB/Swiss-Prot
    A8MV24
    Related
    ENSP00000479396.1, ENST00000614158.1
    Conserved Domains (1) summary
    pfam15075
    Location:12143
    DUF4542; Domain of unknown function (DUF4542)

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20200815

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p13 Primary Assembly

    Range
    38835086..38841438 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p13 ALT_REF_LOCI_1

Genomic

  1. NT_187614.1 Reference GRCh38.p13 ALT_REF_LOCI_1

    Range
    2870405..2876757 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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