U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SPATA41 spermatogenesis associated 41 [ Homo sapiens (human) ]

Gene ID: 388182, updated on 6-Dec-2022

Summary

Official Symbol
SPATA41provided by HGNC
Official Full Name
spermatogenesis associated 41provided by HGNC
Primary source
HGNC:HGNC:48613
See related
Ensembl:ENSG00000189419 AllianceGenome:HGNC:48613
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
HSD47
Expression
Biased expression in testis (RPKM 2.7), liver (RPKM 0.6) and 11 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See SPATA41 in Genome Data Viewer
Location:
15q26.3
Exon count:
2
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (100344457..100350718, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (98101463..98107725, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (100884662..100890923, complement)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene ADAM metallopeptidase with thrombospondin type 1 motif 17 Neighboring gene RNA, 5S ribosomal pseudogene 402 Neighboring gene Sharpr-MPRA regulatory region 9518 Neighboring gene uncharacterized LOC105371021 Neighboring gene CERS3 antisense RNA 1 Neighboring gene ceramide synthase 3 Neighboring gene RNA, U6 small nuclear 322, pseudogene Neighboring gene PRKX pseudogene 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Other Names

  • spermatogenesis associated 41 (non-protein coding)

Clone Names

  • FLJ32974, FLJ42289

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_028139.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AC015723, AK057536, AK124283, BC028144, DB060272
    Related
    ENST00000662214.1
  2. NR_028140.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks three alternate segments, compared to variant 1.
    Source sequence(s)
    AC015723, AK057536, BC028144, DB060272
    Related
    ENST00000558307.1

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    100344457..100350718 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    98101463..98107725 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_207383.2: Suppressed sequence

    Description
    NM_207383.2: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.