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lark [ Drosophila melanogaster (fruit fly) ]

Gene ID: 38811, updated on 9-May-2019

Summary

Official Symbol
larkprovided by FlyBase
Primary source
FLYBASE:FBgn0011640
Locus tag
Dmel_CG8597
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
CG8597; dLARK; Dmel\CG8597; Lark; LARK

Genomic context

See lark in Genome Data Viewer
Location:
65F5-65F5; 3-20 cM
Exon count:
6
Annotation release Status Assembly Chr Location
Release 6.26 current Release 6 plus ISO1 MT (GCF_000001215.4) 3L NT_037436.4 (7339266..7341893)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3L NT_037436.3 (7332366..7334993)

Chromosome 3L - NT_037436.4Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene mutagen-sensitive 312 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene Establishment of cohesion Neighboring gene Cln7 Neighboring gene uncharacterized protein Neighboring gene Signal recognition particle protein 19

Genomic regions, transcripts, and products

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
RNA binding IDA
Inferred from Direct Assay
more info
PubMed 
RNA binding NAS
Non-traceable Author Statement
more info
PubMed 
mRNA binding ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
zinc ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
actin cytoskeleton organization IMP
Inferred from Mutant Phenotype
more info
PubMed 
circadian rhythm IMP
Inferred from Mutant Phenotype
more info
PubMed 
circadian rhythm NAS
Non-traceable Author Statement
more info
PubMed 
cytoplasmic transport, nurse cell to oocyte IMP
Inferred from Mutant Phenotype
more info
PubMed 
eclosion TAS
Traceable Author Statement
more info
PubMed 
eclosion rhythm IMP
Inferred from Mutant Phenotype
more info
PubMed 
eclosion rhythm NAS
Non-traceable Author Statement
more info
PubMed 
eclosion rhythm TAS
Traceable Author Statement
more info
PubMed 
embryo development ending in birth or egg hatching IMP
Inferred from Mutant Phenotype
more info
PubMed 
NOT locomotion TAS
Traceable Author Statement
more info
PubMed 
locomotor rhythm IMP
Inferred from Mutant Phenotype
more info
PubMed 
locomotor rhythm TAS
Traceable Author Statement
more info
PubMed 
mRNA cis splicing, via spliceosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
mRNA splicing, via spliceosome IC
Inferred by Curator
more info
PubMed 
mitotic cell cycle HMP PubMed 
negative regulation of eclosion IMP
Inferred from Mutant Phenotype
more info
PubMed 
positive regulation of cytoplasmic translation IMP
Inferred from Mutant Phenotype
more info
PubMed 
protein localization IMP
Inferred from Mutant Phenotype
more info
PubMed 
regulation of alternative mRNA splicing, via spliceosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
regulation of circadian rhythm IGI
Inferred from Genetic Interaction
more info
PubMed 
regulation of circadian rhythm IMP
Inferred from Mutant Phenotype
more info
PubMed 
regulation of embryonic development IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
catalytic step 2 spliceosome HDA PubMed 
cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
nuclear speck IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleus IDA
Inferred from Direct Assay
more info
PubMed 
precatalytic spliceosome HDA PubMed 

General protein information

Preferred Names
lark
Names
CG8597-PA
CG8597-PB
CG8597-PC
CG8597-PD
CG8597-PE
lark-PA
lark-PB
lark-PC
lark-PD
lark-PE

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_037436.4 Reference assembly

    Range
    7339266..7341893
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_168204.3NP_729239.1  lark, isoform D [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_729239.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q94901
    Related
    FBpp0076555, FBtr0076844
    Conserved Domains (2) summary
    cd12343
    Location:873
    RRM1_2_CoAA_like; RNA recognition motif 1 and 2 in RRM-containing coactivator activator/modulator (CoAA) and similar proteins
    pfam00098
    Location:169184
    zf-CCHC; Zinc knuckle
  2. NM_168205.4NP_729240.1  lark, isoform E [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_729240.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q94901
    Related
    FBpp0076556, FBtr0076845
    Conserved Domains (2) summary
    cd12343
    Location:873
    RRM1_2_CoAA_like; RNA recognition motif 1 and 2 in RRM-containing coactivator activator/modulator (CoAA) and similar proteins
    pfam00098
    Location:169184
    zf-CCHC; Zinc knuckle
  3. NM_079233.6NP_523957.1  lark, isoform A [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_523957.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q94901
    Related
    FBpp0076552, FBtr0076841
    Conserved Domains (2) summary
    cd12343
    Location:873
    RRM1_2_CoAA_like; RNA recognition motif 1 and 2 in RRM-containing coactivator activator/modulator (CoAA) and similar proteins
    pfam00098
    Location:169184
    zf-CCHC; Zinc knuckle
  4. NM_168203.4NP_729238.1  lark, isoform C [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_729238.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q94901
    Related
    FBpp0076554, FBtr0076843
    Conserved Domains (2) summary
    cd12343
    Location:873
    RRM1_2_CoAA_like; RNA recognition motif 1 and 2 in RRM-containing coactivator activator/modulator (CoAA) and similar proteins
    pfam00098
    Location:169184
    zf-CCHC; Zinc knuckle
  5. NM_168202.3NP_729237.1  lark, isoform B [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_729237.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q94901
    Related
    FBpp0076553, FBtr0076842
    Conserved Domains (2) summary
    cd12343
    Location:873
    RRM1_2_CoAA_like; RNA recognition motif 1 and 2 in RRM-containing coactivator activator/modulator (CoAA) and similar proteins
    pfam00098
    Location:169184
    zf-CCHC; Zinc knuckle
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