U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

IGHV1OR15-1 immunoglobulin heavy variable 1/OR15-1 (non-functional) [ Homo sapiens (human) ]

Gene ID: 388077, updated on 17-Jun-2024

Summary

Official Symbol
IGHV1OR15-1provided by HGNC
Official Full Name
immunoglobulin heavy variable 1/OR15-1 (non-functional)provided by HGNC
Primary source
HGNC:HGNC:5563
See related
IMGT/GENE-DB:IGHV1/OR15-1; AllianceGenome:HGNC:5563
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
IGHV1OR151; IGHV1/OR15-1
Summary
Predicted to enable antigen binding activity and immunoglobulin receptor binding activity. Predicted to be involved in several processes, including activation of immune response; defense response to other organism; and phagocytosis. Predicted to be located in extracellular region and plasma membrane. Predicted to be part of immunoglobulin complex, circulating. Predicted to be active in external side of plasma membrane. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in lymph node (RPKM 24.3), colon (RPKM 18.1) and 10 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See IGHV1OR15-1 in Genome Data Viewer
Location:
15q11.2
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (22160289..22160930, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (19065912..19066553, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (22448240..22448881, complement)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107984743 Neighboring gene ribosomal protein S8 pseudogene 10 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:22455274-22455774 Neighboring gene immunoglobulin IGHV1OR15-3-like pseudogene Neighboring gene putative V-set and immunoglobulin domain-containing-like protein IGHV4OR15-8

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Other Names

  • immunoglobulin heavy variable 1/OR15-1 pseudogene

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_135694.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AI201426, HY100667

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    22160289..22160930 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_021160017.1 Reference GRCh38.p14 PATCHES

    Range
    1388910..1389551 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    19065912..19066553 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)