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LINC01551 long intergenic non-protein coding RNA 1551 [ Homo sapiens (human) ]

Gene ID: 387978, updated on 13-May-2022

Summary

Official Symbol
LINC01551provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1551provided by HGNC
Primary source
HGNC:HGNC:19828
See related
Ensembl:ENSG00000186960 AllianceGenome:HGNC:19828
Gene type
ncRNA
RefSeq status
PREDICTED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C14orf23; c14_5148
Expression
Biased expression in brain (RPKM 1.5) and testis (RPKM 0.6) See more
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Genomic context

See LINC01551 in Genome Data Viewer
Location:
14q12
Exon count:
5
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (28772704..28794794)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (22970638..22992723)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (29241910..29264000)

Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene FOXG1 antisense RNA 1 Neighboring gene VISTA enhancer hs1064 Neighboring gene forkhead box G1 Neighboring gene long intergenic non-protein coding RNA 2282 Neighboring gene long intergenic non-protein coding RNA 2281 Neighboring gene long intergenic non-protein coding RNA 2327 Neighboring gene Vac14, PIKFYVE complex component pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
Genetic variation influences glutamate concentrations in brains of patients with multiple sclerosis.
EBI GWAS Catalog

General gene information

Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_026731.1 RNA Sequence

    Status: PREDICTED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AL049777, BX111279, BX248251
  2. NR_026732.1 RNA Sequence

    Status: PREDICTED

    Description
    Transcript Variant: This variant (2) uses an alternate 3' splice pattern, compared to variant 1.
    Source sequence(s)
    AI204146, AL049777, BM839073
    Related
    ENST00000552957.6

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

    Range
    28772704..28794794
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060938.1 Alternate T2T-CHM13v2.0

    Range
    22970638..22992723
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)