Format

Send to:

Choose Destination

TEX36 testis expressed 36 [ Homo sapiens (human) ]

Gene ID: 387718, updated on 1-Jun-2020

Summary

Official Symbol
TEX36provided by HGNC
Official Full Name
testis expressed 36provided by HGNC
Primary source
HGNC:HGNC:31653
See related
Ensembl:ENSG00000175018
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C10orf122; bA383C5.1
Expression
Restricted expression toward testis (RPKM 3.8) See more
Orthologs

Genomic context

See TEX36 in Genome Data Viewer
Location:
10q26.13
Exon count:
6
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 10 NC_000010.11 (125576522..125683163, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (127265091..127371735, complement)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105378545 Neighboring gene uncharacterized LOC105378547 Neighboring gene TEX36 antisense RNA 1 Neighboring gene uncharacterized LOC102724793 Neighboring gene ALDOA pseudogene 2 Neighboring gene uncharacterized LOC283038 Neighboring gene uncharacterized LOC107984277 Neighboring gene EDRF1 divergent transcript

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

NHGRI GWAS Catalog

Description
Genome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease.
NHGRI GWA Catalog

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ27500, MGC157877, MGC157878

General protein information

Preferred Names
testis-expressed protein 36
Names
testis-expressed sequence 36 protein

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001128202.3NP_001121674.1  testis-expressed protein 36 isoform a

    See identical proteins and their annotated locations for NP_001121674.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (a).
    Source sequence(s)
    AA977508, AL158835, BC062717
    Consensus CDS
    CCDS44493.1
    UniProtKB/Swiss-Prot
    Q5VZQ5
    Related
    ENSP00000357811.3, ENST00000368821.4
    Conserved Domains (1) summary
    pfam15115
    Location:1175
    HDNR; Domain of unknown function with conserved HDNR motif
  2. NM_001318133.2NP_001305062.1  testis-expressed protein 36 isoform b

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) contains an alternate 3' terminal exon, and it thus differs in the 3' coding region and 3' UTR, compared to variant 1. The encoded isoform (b) has a distinct C-terminus and is shorter than isoform a.
    Source sequence(s)
    AL158835, AL805915, BC062717, BC127767, BX336391, BX390366
    Consensus CDS
    CCDS81521.1
    UniProtKB/Swiss-Prot
    Q5VZQ5
    UniProtKB/TrEMBL
    A0PJZ8, E9PJL2
    Related
    ENSP00000431764.1, ENST00000532135.5
    Conserved Domains (1) summary
    pfam15115
    Location:188
    HDNR; Domain of unknown function with conserved HDNR motif

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p13 Primary Assembly

    Range
    125576522..125683163 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005269817.4XP_005269874.1  testis-expressed protein 36 isoform X1

    Conserved Domains (1) summary
    pfam15115
    Location:190
    HDNR; Domain of unknown function with conserved HDNR motif
Support Center