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SOGA3 SOGA family member 3 [ Homo sapiens (human) ]

Gene ID: 387104, updated on 23-Nov-2021

Summary

Official Symbol
SOGA3provided by HGNC
Official Full Name
SOGA family member 3provided by HGNC
Primary source
HGNC:HGNC:21494
See related
Ensembl:ENSG00000255330
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C6orf174; dJ403A15.3
Expression
Biased expression in brain (RPKM 11.8), fat (RPKM 5.6) and 13 other tissues See more
Orthologs
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Genomic context

See SOGA3 in Genome Data Viewer
Location:
6q22.33
Exon count:
13
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 6 NC_000006.12 (127438406..127519024, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (127759551..127840169, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene cornichon family AMPA receptor auxiliary protein 4 pseudogene Neighboring gene ribosomal protein L17 pseudogene 23 Neighboring gene KIAA0408 Neighboring gene uncharacterized LOC107986642 Neighboring gene chromosome 6 open reading frame 58 Neighboring gene uncharacterized LOC105377995

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Process Evidence Code Pubs
involved_in regulation of autophagy IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001012279.3NP_001012279.1  protein SOGA3 isoform a precursor

    See identical proteins and their annotated locations for NP_001012279.1

    Status: VALIDATED

    Source sequence(s)
    AK309423, AL096711, BC143043, BE779627, DC377915
    Consensus CDS
    CCDS43505.1
    UniProtKB/Swiss-Prot
    Q5TF21
    UniProtKB/TrEMBL
    A5PLQ8
    Related
    ENSP00000455908.1, ENST00000481848.6
    Conserved Domains (2) summary
    COG1196
    Location:358737
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam11365
    Location:521615
    SOGA; Protein SOGA
  2. NM_001395923.1NP_001382852.1  protein SOGA3 isoform a precursor

    Status: VALIDATED

    Source sequence(s)
    AL096711, AL583806
    Conserved Domains (2) summary
    COG1196
    Location:358737
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam11365
    Location:521615
    SOGA; Protein SOGA
  3. NM_001395924.1NP_001382853.1  protein SOGA3 isoform a precursor

    Status: VALIDATED

    Source sequence(s)
    AL096711, AL583806
    Conserved Domains (2) summary
    COG1196
    Location:358737
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam11365
    Location:521615
    SOGA; Protein SOGA
  4. NM_001395925.1NP_001382854.1  protein SOGA3 isoform a precursor

    Status: VALIDATED

    Source sequence(s)
    AL096711, AL583806
    Conserved Domains (2) summary
    COG1196
    Location:358737
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam11365
    Location:521615
    SOGA; Protein SOGA
  5. NM_001395926.1NP_001382855.1  protein SOGA3 isoform b

    Status: VALIDATED

    Source sequence(s)
    AL096711, AL583806
    Conserved Domains (2) summary
    COG1196
    Location:324715
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam11365
    Location:521615
    SOGA; Protein SOGA
  6. NM_001395928.1NP_001382857.1  protein SOGA3 isoform c precursor

    Status: VALIDATED

    Source sequence(s)
    AL096711, AL583806
    Conserved Domains (1) summary
    COG1196
    Location:324715
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
  7. NM_001395929.1NP_001382858.1  protein SOGA3 isoform c precursor

    Status: VALIDATED

    Source sequence(s)
    AL096711, AL583806
    Conserved Domains (1) summary
    COG1196
    Location:324715
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p13 Primary Assembly

    Range
    127438406..127519024 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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