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SOGA3 SOGA family member 3 [ Homo sapiens (human) ]

Gene ID: 387104, updated on 26-Oct-2022

Summary

Official Symbol
SOGA3provided by HGNC
Official Full Name
SOGA family member 3provided by HGNC
Primary source
HGNC:HGNC:21494
See related
Ensembl:ENSG00000214338 AllianceGenome:HGNC:21494
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C6orf174; dJ403A15.3
Summary
Predicted to be involved in regulation of autophagy. Predicted to be located in extracellular space. Predicted to be integral component of membrane. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in brain (RPKM 11.8), fat (RPKM 5.6) and 13 other tissues See more
Orthologs
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Genomic context

See SOGA3 in Genome Data Viewer
Location:
6q22.33
Exon count:
7
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (127472974..127519335, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (128661901..128708261, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (127794119..127840480, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene SOGA3-KIAA0408 readthrough Neighboring gene uncharacterized LOC124901399 Neighboring gene Sharpr-MPRA regulatory region 7566 Neighboring gene uncharacterized LOC107986642 Neighboring gene chromosome 6 open reading frame 58 Neighboring gene uncharacterized LOC105377995

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Readthrough SOGA3-KIAA0408

Readthrough gene: SOGA3-KIAA0408, Included gene: KIAA0408

Homology

Gene Ontology Provided by GOA

Process Evidence Code Pubs
involved_in regulation of autophagy IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001400265.1NP_001387194.1  protein SOGA3 precursor

    Status: VALIDATED

    Source sequence(s)
    AL096711, AL583806
    Consensus CDS
    CCDS43505.1
    UniProtKB/Swiss-Prot
    Q5TF21
    Related
    ENSP00000434570.1, ENST00000525778.6

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    127472974..127519335 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    128661901..128708261 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001012279.3: Suppressed sequence

    Description
    NM_001012279.3: This RefSeq was removed because currently there is insufficient support for the transcript.
  2. NM_001395923.1: Suppressed sequence

    Description
    NM_001395923.1: This RefSeq was removed because currently there is insufficient support for the transcript.
  3. NM_001395924.1: Suppressed sequence

    Description
    NM_001395924.1: This RefSeq was removed because currently there is insufficient support for the transcript.
  4. NM_001395925.1: Suppressed sequence

    Description
    NM_001395925.1: This RefSeq was removed because currently there is insufficient support for the transcript.
  5. NM_001395926.1: Suppressed sequence

    Description
    NM_001395926.1: This RefSeq was removed because currently there is insufficient support for the transcript.
  6. NM_001395928.1: Suppressed sequence

    Description
    NM_001395928.1: This RefSeq was removed because currently there is insufficient support for the transcript.
  7. NM_001395929.1: Suppressed sequence

    Description
    NM_001395929.1: This RefSeq was removed because currently there is insufficient support for the transcript.