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SNHG5 small nucleolar RNA host gene 5 [ Homo sapiens (human) ]

Gene ID: 387066, updated on 5-Sep-2021

Summary

Official Symbol
SNHG5provided by HGNC
Official Full Name
small nucleolar RNA host gene 5provided by HGNC
Primary source
HGNC:HGNC:21026
See related
Ensembl:ENSG00000203875 MIM:613263
Gene type
ncRNA
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
U50HG; C6orf160; LINC00044; NCRNA00044
Summary
This gene represent a snoRNA host gene and produces a long non-coding RNA. This RNA may regulate gene expression by acting as a sponge for microRNAs. This transcript may also stabilize mRNAs by blocking degradation by staufen double-stranded RNA binding protein 1. [provided by RefSeq, Dec 2017]
Expression
Ubiquitous expression in thyroid (RPKM 203.0), lymph node (RPKM 162.8) and 25 other tissues See more
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Genomic context

See SNHG5 in Genome Data Viewer
Location:
6q14.3
Exon count:
6
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 6 NC_000006.12 (85677007..85678733, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (86386725..86388451, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene synaptotagmin binding cytoplasmic RNA interacting protein Neighboring gene uncharacterized LOC107986622 Neighboring gene pyruvate kinase M1/2 pseudogene 3 Neighboring gene small nucleolar RNA, C/D box 50A Neighboring gene small nucleolar RNA, C/D box 50B Neighboring gene heat shock protein 90 alpha family class B member 1 pseudogene Neighboring gene small integral membrane protein 11 pseudogene 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Other Names

  • U50 host
  • long intergenic non-protein coding RNA 44
  • small nucleolar RNA host gene 5 (non-protein coding)

Clone Names

  • MGC16362

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_003038.2 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    CD384894, CD388674
    Related
    ENST00000669678.1

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p13 Primary Assembly

    Range
    85677007..85678733 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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