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LINC00533 long intergenic non-protein coding RNA 533 [ Homo sapiens (human) ]

Gene ID: 387055, updated on 5-Oct-2018

Summary

Official Symbol
LINC00533provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 533provided by HGNC
Primary source
HGNC:HGNC:18690
See related
Ensembl:ENSG00000235570
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C6orf38; C6orf39
Expression
Low expression observed in reference dataset See more

Genomic context

See LINC00533 in Genome Data Viewer
Location:
6p22.1
Exon count:
3
Annotation release Status Assembly Chr Location
109 current GRCh38.p12 (GCF_000001405.38) 6 NC_000006.12 (28648286..28654475, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105374996 Neighboring gene transfer RNA-Ala (TGC) 2-1 Neighboring gene transfer RNA-Thr (CGT) 3-1 Neighboring gene transfer RNA-Ala (AGC) 4-1 Neighboring gene transfer RNA-Ala (CGC) 2-1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Jun 15 11:32:44 2016

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_135285.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL121932
    Related
    ENST00000456103.1

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p12 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p12 Primary Assembly

    Range
    28648286..28654475 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p12 ALT_REF_LOCI_2

Genomic

  1. NT_113891.3 Reference GRCh38.p12 ALT_REF_LOCI_2

    Range
    138124..144314 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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