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ZNF582-DT ZNF582 divergent transcript [ Homo sapiens (human) ]

Gene ID: 386758, updated on 13-May-2022

Summary

Official Symbol
ZNF582-DTprovided by HGNC
Official Full Name
ZNF582 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:25213
See related
Ensembl:ENSG00000267454 AllianceGenome:HGNC:25213
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
ZNF582-AS1
Expression
Ubiquitous expression in ovary (RPKM 2.1), testis (RPKM 1.9) and 25 other tissues See more
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Genomic context

See ZNF582-DT in Genome Data Viewer
Location:
19q13.43
Exon count:
3
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (56393676..56399175)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (59488080..59493577)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (56905045..56910544)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene zinc finger and SCAN domain containing 5A Neighboring gene Sharpr-MPRA regulatory region 13801 Neighboring gene zinc finger protein 542, pseudogene Neighboring gene SLC25A36 pseudogene 1 Neighboring gene zinc finger protein 582 Neighboring gene zinc finger protein 583 Neighboring gene zinc finger protein 667 Neighboring gene ZNF667 antisense RNA 1 (head to head)

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Other Names

  • ZNF582 antisense RNA 1 (head to head)
  • ZNF582 antisense RNA 1 (non-protein coding)

Clone Names

  • AC006116.25

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_037159.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AW160702, BC036928
    Related
    ENST00000587979.1
  2. NR_037160.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an alternate internal exon in the 5' region and contains an internal segment in the 3' region, compared to variant 1.
    Source sequence(s)
    AC006116, AW160702, BC024249
    Related
    ENST00000585659.1
  3. NR_037161.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) contains internal segments in the 5' and 3' regions, compared to variant 1.
    Source sequence(s)
    AC006116, AW160702, BC040939
    Related
    ENST00000589888.5

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

    Range
    56393676..56399175
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060943.1 Alternate T2T-CHM13v2.0

    Range
    59488080..59493577
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)