U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

OFD1P3Y OFD1 pseudogene 3 Y-linked [ Homo sapiens (human) ]

Gene ID: 386687, updated on 10-Oct-2023

Summary

Go to the top of the page Help
Official Symbol
OFD1P3Yprovided by HGNC
Official Full Name
OFD1 pseudogene 3 Y-linkedprovided by HGNC
Primary source
HGNC:HGNC:23875
See related
AllianceGenome:HGNC:23875
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
OFD1P3; OFDYP3; OFD1P19; OFD1PY3; OFD1P19Y; OFD1PY19
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See OFD1P3Y in Genome Data Viewer
Location:
Yp11.2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) Y NC_000024.10 (9034110..9040188)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) Y NC_060948.1 (8690226..8696304)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) Y NC_000024.9 (8902151..8908229)

Chromosome Y - NC_000024.10Genomic Context describing neighboring genes Neighboring gene testis expressed transcript, Y-linked 31, pseudogene Neighboring gene testis expressed transcript, Y-linked 24, pseudogene Neighboring gene IR4 Yp recombination region Neighboring gene chromodomain Y-linked 3 pseudogene Neighboring gene USP9Y pseudogene 22

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes. Skaletsky H, et al. Nature, 2003 Jun 19. PMID 12815422
  2. Toward a complete human genome sequence. Sanger Center, et al. Genome Res, 1998 Nov. PMID 9847074

GeneRIFs: Gene References Into Functions

Phenotypes

Go to the top of the page Help

Review eQTL and phenotype association data in this region using PheGenI

Variation

Go to the top of the page Help

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

Go to the top of the page Help

Markers

Other Names

  • OFD1 pseudogene 19, Y-linked
  • OFD1 pseudogene, Y-linked 19
  • OFD1 pseudogene, Y-linked 3
  • oral-facial-digital syndrome 1 pseudogene

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_003116.4 

    Range
    101..6179
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000024.10 Reference GRCh38.p14 Primary Assembly

    Range
    9034110..9040188
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060948.1 Alternate T2T-CHM13v2.0

    Range
    8690226..8696304
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases