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eif4a1a eukaryotic translation initiation factor 4A1A [ Danio rerio (zebrafish) ]

Gene ID: 386634, updated on 4-Nov-2022

Summary

Official Symbol
eif4a1aprovided by ZNC
Official Full Name
eukaryotic translation initiation factor 4A1Aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-031030-2
See related
Ensembl:ENSDARG00000092115 AllianceGenome:ZFIN:ZDB-GENE-031030-2
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
eif4a1; fb49a04; im:7143023; wu:fb20a10; wu:fb49a04; wu:fc76a02; wu:fc96c01; wu:fd15g03
Summary
Predicted to enable translation initiation factor activity. Predicted to be involved in cytoplasmic translational initiation. Predicted to act upstream of or within translational initiation. Is expressed in several structures, including immature eye; neural rod; neuromast; paraxial mesoderm; and somite. Orthologous to human EIF4A1 (eukaryotic translation initiation factor 4A1). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
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Genomic context

See eif4a1a in Genome Data Viewer
Location:
chromosome: 7
Exon count:
11
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (26510532..26518089, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (26239339..26246896, complement)
103 previous assembly Zv9 (GCF_000002035.4) 7 NC_007118.5 (27636400..27643957, complement)

Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101886548 Neighboring gene SRY-box transcription factor 19b Neighboring gene SUMO specific peptidase 3b Neighboring gene si:dkey-62k3.5

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 
enables helicase activity IEA
Inferred from Electronic Annotation
more info
 
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 
enables nucleotide binding IEA
Inferred from Electronic Annotation
more info
 
enables translation initiation factor activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables translation initiation factor activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in cytoplasmic translational initiation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
acts_upstream_of_or_within translation IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within translational initiation IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
eukaryotic translation initiation factor 4A1A
Names
eukaryotic translation initiation factor 4A
NP_938180.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_198366.2NP_938180.1  eukaryotic translation initiation factor 4A1A

    See identical proteins and their annotated locations for NP_938180.1

    Status: VALIDATED

    Source sequence(s)
    BC048899, CR848032, EB766529
    UniProtKB/TrEMBL
    A0A8M1PB73, Q802C9
    Related
    ENSDARP00000058912.4, ENSDART00000058913.5
    Conserved Domains (1) summary
    PTZ00424
    Location:20406
    PTZ00424; helicase 45; Provisional

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007118.7 Reference GRCz11 Primary Assembly

    Range
    26510532..26518089 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)