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KCTD4 potassium channel tetramerization domain containing 4 [ Homo sapiens (human) ]

Gene ID: 386618, updated on 17-Jun-2019

Summary

Official Symbol
KCTD4provided by HGNC
Official Full Name
potassium channel tetramerization domain containing 4provided by HGNC
Primary source
HGNC:HGNC:23227
See related
Ensembl:ENSG00000180332
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
bA321C24.3
Expression
Biased expression in brain (RPKM 6.1), skin (RPKM 1.4) and 1 other tissue See more
Orthologs

Genomic context

See KCTD4 in Genome Data Viewer
Location:
13q14.12-q14.13
Exon count:
2
Annotation release Status Assembly Chr Location
109.20190607 current GRCh38.p13 (GCF_000001405.39) 13 NC_000013.11 (45192853..45201045, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (45766988..45775175, complement)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene general transcription factor IIF subunit 2 Neighboring gene RN7SK pseudogene 4 Neighboring gene RNA, U6 small nuclear 69, pseudogene Neighboring gene uncharacterized LOC105370190 Neighboring gene small nucleolar RNA, H/ACA box 31B Neighboring gene tumor protein, translationally-controlled 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
protein homooligomerization IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
BTB/POZ domain-containing protein KCTD4
Names
potassium channel tetramerisation domain containing 4

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_198404.3NP_940686.2  BTB/POZ domain-containing protein KCTD4

    See identical proteins and their annotated locations for NP_940686.2

    Status: VALIDATED

    Source sequence(s)
    AL138963, BC018063, BQ575935, DA683655, DB557284
    Consensus CDS
    CCDS9396.1
    UniProtKB/Swiss-Prot
    Q8WVF5
    Related
    ENSP00000368402.1, ENST00000379108.1
    Conserved Domains (1) summary
    cl02518
    Location:36123
    BTB; BTB/POZ domain

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p13 Primary Assembly

    Range
    45192853..45201045 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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