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Gm1527 predicted gene 1527 [ Mus musculus (house mouse) ]

Gene ID: 385263, updated on 26-Sep-2022

Summary

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Official Symbol
Gm1527provided by MGI
Official Full Name
predicted gene 1527provided by MGI
Primary source
MGI:MGI:2686373
See related
Ensembl:ENSMUSG00000074655 AllianceGenome:MGI:2686373
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm1136
Summary
Predicted to enable GTPase activator activity. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward testis adult (RPKM 5.1) See more
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Genomic context

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See Gm1527 in Genome Data Viewer
Location:
3; 3 A3
Exon count:
15
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (28946768..28980874)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (28892619..28926725)

Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene ribosomal protein L22 like 1 Neighboring gene predicted gene, 33051 Neighboring gene predicted gene, 33102 Neighboring gene predicted gene, 33154 Neighboring gene EGF-like and EMI domain containing 1 Neighboring gene microRNA 551b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
  5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables GTPase activator activity IBA
Inferred from Biological aspect of Ancestor
more info
 PubMed 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC385263

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001033479.5 → NP_001028651.1  uncharacterized protein LOC385263

    See identical proteins and their annotated locations for NP_001028651.1

    Status: VALIDATED

    Source sequence(s)
    AC132583
    Consensus CDS
    CCDS38404.1
    UniProtKB/TrEMBL
    Q3V0P3
    Related
    ENSMUSP00000096773.2, ENSMUST00000099170.2
    Conserved Domains (3) summary
    cd13319
    Location:14 → 112
    PH_RARhoGAP; RA and RhoGAP domain-containing protein Pleckstrin homology PH domain
    cl02570
    Location:288 → 477
    RhoGAP; GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to ...
    cl28922
    Location:125 → 240
    Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000069.7 Reference GRCm39 C57BL/6J

    Range
    28946768..28980874
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017319633.2 → XP_017175122.1  uncharacterized protein LOC385263 isoform X2

    UniProtKB/TrEMBL
    Q3V0P3
    Conserved Domains (3) summary
    cd13319
    Location:14 → 112
    PH_RARhoGAP; RA and RhoGAP domain-containing protein Pleckstrin homology PH domain
    cl02570
    Location:288 → 477
    RhoGAP; GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to ...
    cl28922
    Location:125 → 240
    Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold

  2. XM_030252663.1 → XP_030108523.1  uncharacterized protein LOC385263 isoform X1

    Conserved Domains (3) summary
    cd13319
    Location:14 → 112
    PH_RARhoGAP; RA and RhoGAP domain-containing protein Pleckstrin homology PH domain
    cl02570
    Location:288 → 477
    RhoGAP; GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to ...
    cl28922
    Location:125 → 240
    Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold

  3. XM_030252664.1 → XP_030108524.1  uncharacterized protein LOC385263 isoform X3

    Conserved Domains (3) summary
    cd13319
    Location:14 → 112
    PH_RARhoGAP; RA and RhoGAP domain-containing protein Pleckstrin homology PH domain
    cl02570
    Location:288 → 448
    RhoGAP; GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to ...
    cl28922
    Location:125 → 240
    Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold

  4. XM_030252665.1 → XP_030108525.1  uncharacterized protein LOC385263 isoform X3

    Conserved Domains (3) summary
    cd13319
    Location:14 → 112
    PH_RARhoGAP; RA and RhoGAP domain-containing protein Pleckstrin homology PH domain
    cl02570
    Location:288 → 448
    RhoGAP; GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to ...
    cl28922
    Location:125 → 240
    Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold

  5. XM_036163149.1 → XP_036019042.1  uncharacterized protein LOC385263 isoform X3

    Conserved Domains (3) summary
    cd13319
    Location:14 → 112
    PH_RARhoGAP; RA and RhoGAP domain-containing protein Pleckstrin homology PH domain
    cl02570
    Location:288 → 448
    RhoGAP; GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to ...
    cl28922
    Location:125 → 240
    Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold

  6. XM_017319634.1 → XP_017175123.1  uncharacterized protein LOC385263 isoform X4

    Conserved Domains (1) summary
    cl02570
    Location:91 → 280
    RhoGAP; GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to ...
Nucleotide Protein Strain
Heading Accession and Version

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