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CG9018 [ Drosophila melanogaster (fruit fly) ]

Gene ID: 38283, updated on 4-Apr-2024

Summary

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Official Symbol
CG9018provided by FlyBase
Primary source
FLYBASE:FBgn0035318
Locus tag
Dmel_CG9018
See related
AllianceGenome:FB:FBgn0035318
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
Dmel\CG9018; FBgn0035318
Summary
Predicted to enable RNA polymerase II complex binding activity. Predicted to be involved in mRNA 3'-end processing. Predicted to be part of RNA polymerase II, holoenzyme. Is expressed in adult head and organism. Orthologous to human RPRD1A (regulation of nuclear pre-mRNA domain containing 1A) and RPRD1B (regulation of nuclear pre-mRNA domain containing 1B). [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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Location:
62D3-62D3; 3-2 cM
Exon count:
4
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3L NT_037436.4 (2235284..2237076, complement)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3L NT_037436.3 (2235284..2237076, complement)

Chromosome 3L - NT_037436.4Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Outer segment 2 Neighboring gene Adenylyl cyclase X D Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Competition within Introns: Splicing Wins over Polyadenylation via a General Mechanism. Tikhonov M, et al. Acta Naturae, 2013 Oct. PMID 24455183, Free PMC Article
  2. EAST Organizes Drosophila Insulator Proteins in the Interchromosomal Nuclear Compartment and Modulates CP190 Binding to Chromatin. Golovnin A, et al. PLoS One, 2015. PMID 26489095, Free PMC Article
  3. Transcription factor networks in Drosophila melanogaster. Rhee DY, et al. Cell Rep, 2014 Sep 25. PMID 25242320, Free PMC Article
  4. Drosophila muller f elements maintain a distinct set of genomic properties over 40 million years of evolution. Leung W, et al. G3 (Bethesda), 2015 Mar 4. PMID 25740935, Free PMC Article
  5. Hedgehog Signaling Strength Is Orchestrated by the mir-310 Cluster of MicroRNAs in Response to Diet. Çiçek IÖ, et al. Genetics, 2016 Mar. PMID 26801178, Free PMC Article

See all (28) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables RNA polymerase II complex binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in mRNA 3'-end processing IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein
Names
CG9018-PA
CG9018-PB

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_037436.4 Reference assembly

    Range
    2235284..2237076 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_139444.2 → NP_647701.1  uncharacterized protein Dmel_CG9018, isoform A [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_647701.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9W039
    Related
    FBpp0072788
    Conserved Domains (2) summary
    smart00582
    Location:8 → 131
    RPR; domain present in proteins, which are involved in regulation of nuclear pre-mRNA
    pfam16566
    Location:229 → 371
    CREPT; Cell-cycle alteration and expression-elevated protein in tumour

  2. NM_167938.2 → NP_728723.1  uncharacterized protein Dmel_CG9018, isoform B [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_728723.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8SX50
    Related
    FBpp0072787
    Conserved Domains (2) summary
    smart00582
    Location:8 → 131
    RPR; domain present in proteins, which are involved in regulation of nuclear pre-mRNA
    pfam16566
    Location:229 → 325
    CREPT; Cell-cycle alteration and expression-elevated protein in tumour
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8SX50 Q8SX50
Q9W039 Q9W039

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