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Tmem29 transmembrane protein 29 [ Mus musculus (house mouse) ]

Gene ID: 382245, updated on 26-Sep-2022

Summary

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Official Symbol
Tmem29provided by MGI
Official Full Name
transmembrane protein 29provided by MGI
Primary source
MGI:MGI:1923420
See related
Ensembl:ENSMUSG00000041353 AllianceGenome:MGI:1923420
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
CXorf44-like; 2700081K05Rik; 6330540D07Rik
Summary
Predicted to be located in nuclear envelope. Orthologous to several human genes including FAM156B (family with sequence similarity 156 member B). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in CNS E18 (RPKM 6.7), CNS E14 (RPKM 6.1) and 18 other tissues See more
Orthologs
human all
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Genomic context

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See Tmem29 in Genome Data Viewer
Location:
X; X F3
Exon count:
9
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) X NC_000086.8 (149180771..149250327, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (150397775..150495036, complement)

Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene predicted gene 15104 Neighboring gene methylphosphate capping enzyme pseudogene Neighboring gene zinc finger CCCH type containing 14 pseudogene Neighboring gene apurinic/apyrimidinic endonuclease 2 Neighboring gene microRNA 3620 Neighboring gene Alas2R1 erythroid cis-regulatory module Neighboring gene aminolevulinic acid synthase 2, erythroid

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Abundance of female-biased and paucity of male-biased somatically expressed genes on the mouse X-chromosome. Reinius B, et al. BMC Genomics, 2012 Nov 10. PMID 23140559, Free PMC Article
  2. Gene expression in the developing mouse retina by EST sequencing and microarray analysis. Mu X, et al. Nucleic Acids Res, 2001 Dec 15. PMID 11812828, Free PMC Article
  3. A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Hansen J, et al. Proc Natl Acad Sci U S A, 2003 Aug 19. PMID 12904583, Free PMC Article
  4. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  5. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article

See all (16) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nuclear envelope ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
protein FAM104B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001164683.2 → NP_001158155.1  protein FAM104B isoform a

    See identical proteins and their annotated locations for NP_001158155.1

    Status: VALIDATED

    Source sequence(s)
    AL808140, BY288280
    Consensus CDS
    CCDS53218.1
    UniProtKB/TrEMBL
    A2ANF5
    Related
    ENSMUSP00000134594.2, ENSMUST00000173996.8
    Conserved Domains (1) summary
    pfam15549
    Location:1 → 167
    PGC7_Stella; PGC7/Stella/Dppa3 domain

  2. NM_001164684.2 → NP_001158156.1  protein FAM104B isoform a

    See identical proteins and their annotated locations for NP_001158156.1

    Status: VALIDATED

    Source sequence(s)
    AK018228, AL808140
    Consensus CDS
    CCDS53218.1
    UniProtKB/TrEMBL
    A2ANF5
    Related
    ENSMUSP00000053632.2, ENSMUST00000059256.8
    Conserved Domains (1) summary
    pfam15549
    Location:1 → 167
    PGC7_Stella; PGC7/Stella/Dppa3 domain

  3. NM_001164686.1 → NP_001158158.1  protein FAM104B isoform b

    Status: VALIDATED

    Source sequence(s)
    AL808140, BC058428, CK624690
    Consensus CDS
    CCDS53219.1
    UniProtKB/TrEMBL
    E9PZH0
    Related
    ENSMUSP00000132541.2, ENSMUST00000163233.2
    Conserved Domains (1) summary
    pfam15434
    Location:17 → 123
    FAM104; Family 104

  4. NM_001359038.1 → NP_001345967.1  protein FAM104B isoform c

    Status: VALIDATED

    Source sequence(s)
    AL808140, BC058428, CX205977
    Related
    ENSMUST00000141948.8
    Conserved Domains (1) summary
    pfam15434
    Location:3 → 113
    FAM104; Family 104

  5. NM_001359039.1 → NP_001345968.1  protein FAM104B isoform a

    Status: VALIDATED

    Source sequence(s)
    AL808140
    Consensus CDS
    CCDS53218.1
    UniProtKB/TrEMBL
    A2ANF5
    Conserved Domains (1) summary
    pfam15549
    Location:1 → 167
    PGC7_Stella; PGC7/Stella/Dppa3 domain

RNA

  1. NR_152724.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AA690651, AL808140, BC058428

  2. NR_152725.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK012546, AL808140, BC058428
    Related
    ENSMUST00000148968.8

  3. NR_152726.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK165152, AL808140
    Related
    ENSMUST00000127532.2

  4. NR_152727.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK165152, AW491285, BF468601

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000086.8 Reference GRCm39 C57BL/6J

    Range
    149180771..149250327 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011247836.3 → XP_011246138.1  protein FAM104B isoform X2

    Conserved Domains (1) summary
    pfam15434
    Location:15 → 126
    FAM104; Family 104

  2. XM_006528894.3 → XP_006528957.1  protein FAM104B isoform X1

    Conserved Domains (1) summary
    pfam15434
    Location:21 → 131
    FAM104; Family 104

  3. XM_030251377.1 → XP_030107237.1  protein FAM104B isoform X3

    Conserved Domains (1) summary
    pfam15434
    Location:3 → 113
    FAM104; Family 104
Nucleotide Protein Strain
Heading Accession and Version

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