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2310040G24Rik RIKEN cDNA 2310040G24 gene [ Mus musculus (house mouse) ]

Gene ID: 381792, updated on 8-Feb-2024

Summary

Official Symbol
2310040G24Rikprovided by MGI
Official Full Name
RIKEN cDNA 2310040G24 geneprovided by MGI
Primary source
MGI:MGI:1916897
See related
Ensembl:ENSMUSG00000101655 AllianceGenome:MGI:1916897
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Acts upstream of or within response to wounding. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in heart adult (RPKM 3.9), liver E18 (RPKM 3.4) and 26 other tissues See more
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Genomic context

Location:
6 D1; 6 37.71 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (86460358..86465209, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (86483376..86488227, complement)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_16526 Neighboring gene cytotoxic granule-associated RNA binding protein 1 Neighboring gene STARR-positive B cell enhancer ABC_E6450 Neighboring gene STARR-positive B cell enhancer ABC_E8112 Neighboring gene expressed sequence C87436 Neighboring gene STARR-seq mESC enhancer starr_16527 Neighboring gene RIKEN cDNA A430078I02 gene Neighboring gene STARR-seq mESC enhancer starr_16530 Neighboring gene predicted gene, 52866 Neighboring gene STARR-seq mESC enhancer starr_16532 Neighboring gene poly(rC) binding protein 1

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_040292.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AC153374, AK009724, BC070414
    Related
    ENSMUST00000189386.3
  2. NR_040293.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice site resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AC153374
    Related
    ENSMUST00000188135.3

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    86460358..86465209 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)